New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4933279 =	63 (0.860)	4 (0.060)	4/238	NT	6.8%	coding (1215/1308 nt)	flhF	flagellar biosynthesis protein FlhF
	?	NC_002947	4933306 =	49 (0.700)					coding (1188/1308 nt)	flhF	flagellar biosynthesis protein FlhF

GCATAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTT  >  NC_002947/4933158‑4933449                                                                                                                                                       |                                                                                                                                                gCATAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgca                                                                                                                                                >  2:1102026/1‑150 (MQ=255)  gaTAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GCCCATAGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCTCGgcag                                                                                                                                               >  2:281092/2‑150 (MQ=255)   aTAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcagg                                                                                                                                              >  2:1619843/1‑150 (MQ=255)    tAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggt                                                                                                                                             <  1:1709913/150‑1 (MQ=255)    tAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCATCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggt                                                                                                                                             <  1:1591367/150‑1 (MQ=255)                ctcgatgaaacggcaagccttggcgatgtgttgagccttgccatcagtcatgaactgccagtggcatatcttaccgatggcccacgcattcctgacgacctgcacctgccgcgtgaccaactggtggccccgcggCAGGTGCAGgtcgtc                                                                                                                                   <  1:1468393‑M2/15‑1 (MQ=255)                   cGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGaa                                                                                                                              <  1:1727900/150‑1 (MQ=255)                        aacggcaagccttggcgatgtgttgagccttgccatccgtcatgaactgccagtggcctatcttaccgatggcccacgcattcctgacgacctgcacctgccgcgcgaccaactggtggccccgcggcaggtgcaggt                                                                                                                                       >  1:1568114‑M2/128‑138 (MQ=255)                        aacggcaagccttggcgatgtgttgagccttgccatcagtcatgaactgccagtggcctatcttaccgatggcccacgcattcctgacgacctgcacctgccgcgcgaccaactggtggccccgcggcaggtgcaggt                                                                                                                                       <  2:1568114‑M2/11‑1 (MQ=255)                         aTGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTg                                                                                                                        <  1:1034169/150‑1 (MQ=255)                          tGGTCAACCCGCTCTCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGATCTTGGGACCAACTGGTGCCTCTTCGGCAGGTGCAGGTCGTCAGGAATGCGTgg                                                                                                                       <  1:243289/150‑1 (MQ=255)                          tGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTgg                                                                                                                       <  1:962562/150‑1 (MQ=255)                            gTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGgtc                                                                                                                                      >  1:1539600/1‑133 (MQ=255)                            gTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGgtc                                                                                                                                      <  2:1539600/133‑1 (MQ=255)                               aaCCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCAt                                                                                                                  <  1:1619843/150‑1 (MQ=255)                               aaCCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTACAGGTCGTCAGGAATGCGTGGGCCAt                                                                                                                  <  2:1778028/150‑1 (MQ=255)                                  ccGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCgg                                                                                                               >  1:979515/1‑150 (MQ=255)                                      tCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAg                                                                                                                                 <  1:467738/128‑1 (MQ=255)                                      tCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAg                                                                                                                                 >  2:467738/1‑128 (MQ=255)                                          cGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCCCCTTGACCGCCCGCGTGACCACCTGGTAACCCCGCGTCAGGTGCAGGGCGTCAGGAATGCGTGGGCCATCGGTAAGATAg                                                                                                       >  1:1400659/1‑150 (MQ=255)                                           gcagcagcaggacgagccCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAgg                                                                                                      <  1:1062699‑M1/132‑1 (MQ=255)                                           gTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAgg                                                                                                      <  1:781262/150‑1 (MQ=255)                                              ggTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCa                                                                                                   <  1:1102026/150‑1 (MQ=255)                                               gTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCAc                                                                                                  <  2:1742257/150‑1 (MQ=255)                                               ccgatcttAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCAc                                                                                                  <  1:216979/143‑1 (MQ=255)                                                   tgATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCACGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGc                                                                                              >  1:1455756/1‑150 (MQ=255)                                                     aTAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAg                                                                                            >  2:1796973/1‑150 (MQ=255)                                                       agagATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGtt                                                                                          >  2:1655148/1‑150 (MQ=255)                                                       agagATCAGCGAACATGGC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCTTCCGCGAGACCAACTGGTGGCCCCGCGGCAGGTGAAGGGCATGAGGAATAAGTGGGCCATCGGTAAGATAGGCCACtagagcgg                                                                                          >  2:216979/1‑143 (MQ=255)                                                        gagaTCAGCGAACATTTC‑‑GGCCATGGCCTCTGCGTTGTGTTCGTCCTGCTGCTGCACATTCACCGCCCGCGTTACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTc                                                                                         <  1:336522/150‑1 (MQ=255)                                                            tCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGa                                                                                     <  2:979515/150‑1 (MQ=255)                                                            gcccagcgaagaggccatggccgacatgttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCAt                                                                                       <  2:1062699‑M2/115‑1 (MQ=255)                                                              ccagcgaaaaggccatggccgacatgttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggtgcag                                                                                                                                         <  1:619129‑M2/65‑1 (MQ=255)                                                              ccagcgaaaaggccatggccgacatgttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggtgcag                                                                                                                                         >  2:619129‑M2/34‑98 (MQ=255)                                                              AGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTggg                                                                                                                      <  2:1499981‑M1/115‑1 (MQ=255)                                                              AGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTggg                                                                                                                      >  1:1499981‑M1/1‑115 (MQ=255)                                                              AGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCAt                                                                                       <  1:233721‑M1/146‑1 (MQ=255)                                                              AGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCAt                                                                                       >  2:233721‑M1/1‑146 (MQ=255)                                                              AGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACt                                                                                   <  2:94944‑M1/150‑1 (MQ=255)                                                                  AACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCCGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATg                                                                               >  2:1612451‑M1/1‑150 (MQ=255)                                                                   ACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATgg                                                                              >  2:236863‑M1/1‑150 (MQ=255)                                                                   ACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATgg                                                                              <  1:1218280‑M1/150‑1 (MQ=255)                                                                   ACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCACGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATgg                                                                              >  2:1455756‑M1/1‑150 (MQ=255)                                                                      tGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCaa                                                                           >  1:167344/1‑150 (MQ=255)                                                                       gTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAg                                                                          <  1:1655148/150‑1 (MQ=255)                                                                        tC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAgg                                                                         <  1:893258/150‑1 (MQ=255)                                                                            ggCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCt                                                                       >  2:1559284/1‑150 (MQ=255)                                                                              ccATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCa                                                                     >  1:1913282/1‑150 (MQ=255)                                                                               cATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCaa                                                                    <  2:1218280/150‑1 (MQ=255)                                                                               cATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCaa                                                                    <  1:38896/150‑1 (MQ=255)                                                                                 tGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAaca                                                                  >  1:1815785/1‑150 (MQ=255)                                                                                 tGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAaca                                                                  <  1:164019/150‑1 (MQ=255)                                                                                      tctTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAAGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCg                                                             >  1:346382/1‑150 (MQ=255)                                                                                        ttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGcc                                                           <  2:1400659‑M2/143‑1 (MQ=255)                                                                                             tgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAAGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGc                                                      <  2:346382‑M2/148‑1 (MQ=255)                                                                                                  tCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGcc                                                 <  1:1819450/150‑1 (MQ=255)                                                                                                   cGTCCTGCTGCTGCACATTCACCGCCCGCGTTACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCg                                                >  1:1226951/1‑150 (MQ=255)                                                                                                     tCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTgg                                                                                               >  1:1429064/1‑101 (MQ=255)                                                                                                     tCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTgg                                                                                               <  2:1429064/101‑1 (MQ=255)                                                                                                       ctgctgctgCACATTCACCGCCCGCGTTACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTc                                            <  2:1226951/150‑1 (MQ=255)                                                                                                       ctgctgctgCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggtgca                                                                                                                                          >  2:1354863/1‑56 (MQ=255)                                                                                                       ctgctgctgCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGgcaggtgca                                                                                                                                          <  1:1354863/56‑1 (MQ=255)                                                                                                             gacgacctgcacctgCCGCGGGGCCACCAGTTGGTCACGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATATGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAg                                      <  1:1468393‑M1/135‑1 (MQ=255)                                                                                                                 acctgcacctgCCGCGGGGCCACCAGTTGGTCGCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGtt                                              <  2:1568114‑M1/127‑1 (MQ=255)                                                                                                                 acctgcacctgCCGCGGGGCCACCAGTTGGTCGCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACGGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGtt                                              >  1:1568114‑M1/12‑138 (MQ=255)                                                                                                                  cgatctccgcccgcGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTgg                                 <  2:924899/144‑1 (MQ=255)                                                                                                                  caTTCACCGCCCGCGTGACCAACTGGTGGCCCCGCTGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTgg                                 >  1:1217960/1‑150 (MQ=255)                                                                                                                    ttCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTc                               <  2:1609266/150‑1 (MQ=255)                                                                                                                     tCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCa                              <  1:94944/150‑1 (MQ=255)                                                                                                                         cgcccgcGTGACCAACTGGTGGCCCCGCGGCAGGTGAAGATCGACAGGAATGCGTGGGCCATCGGTAAGTGAGGACCCTGGCCAGCGACGCCTTATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGtagatcg                          >  1:924899/1‑144 (MQ=255)                                                                                                                              GCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGc                     <  1:670915‑M1/150‑1 (MQ=255)                                                                                                                                    ccAGCTGCTGTCCCCGTGGTAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCCTCGATTTTGGTCAGGATGCAGCCggcca               <  2:167344/150‑1 (MQ=255)                                                                                                                                    ccAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAg                                                                          <  2:252176/91‑1 (MQ=255)                                                                                                                                    ccAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAg                                                                          >  1:252176/1‑91 (MQ=255)                                                                                                                                    ccAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCggcca               <  1:845687/150‑1 (MQ=255)                                                                                                                                     caccagttggtcacgcggCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATATGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCggccag              <  2:1468393‑M2/132‑1 (MQ=255)                                                                                                                                           gtggCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCcaca        >  1:147603/1‑150 (MQ=255)                                                                                                                                                cccGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCTGGGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCt   >  1:19008/1‑150 (MQ=255)                                                                                                                                                cccGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCt   >  1:1412324/1‑150 (MQ=255)                                                                                                                                                 ccGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCtt  >  2:648482/1‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                GCATAGCGACTTTGCACACGCTTCATGGTCAACCCGCTCGCCGTGGGTTGTGATAGAGATCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTT  >  NC_002947/4933158‑4933449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.