| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4988169 | 63 (0.860) | 4 (0.060) | 4/240 | NT | 6.6% | coding (535/744 nt) | ycgR | flagellar brake protein YcgR |
| ? | NC_002947 | = 4988204 | 53 (0.750) | coding (570/744 nt) | ycgR | flagellar brake protein YcgR | |||||
CCGCGCTGAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4988017‑4988169‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGAGGTGAGCACC < NC_002947/4988204‑4988058 CCGCGCTGAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGG < 1:684950/150‑1 TCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCCAGTGGGTTGCCCGCCTTGAA > 1:370506/1‑150 CACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTT < 2:370506/150‑1 AGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC > 1:323026/1‑80 AGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC < 2:323026/80‑1 TGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCCAGTGGGTTGCCCGCCTTGAAGCGCTCA < 1:1051155/70‑1 TGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCCAGTGGGTTGCCCGCCTTGAAGCGCTCA > 2:1051155/1‑70 GCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGAGGTGAGCACC < 1:1509136/150‑1 GCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGA > 1:664418/1‑140 GCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGA < 2:664418/140‑1 GCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCT < 1:1413032/70‑1 GCCCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCT > 2:1413032/1‑70 CCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGAG > 1:380151/1‑139 CCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGAG < 2:380151/139‑1 CCGCGCTGAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4988017‑4988169‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCAGTGGGTTGCCCGCCTTGAAGCGCTCATACACCTGGCCCAGTTGCAAGCGGTCTTCGACATTGCCTTCGAAGCGCAGTTTGCAGCCGGTGGCCGAGATATCCAGCAGCTTGCCTCGCATGGCGCCGTTGCCCTTGAGGTGAGCACC < NC_002947/4988204‑4988058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |