New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4988169	63 (0.860)	4 (0.060)	4/240	NT	6.6%	coding (535/744 nt)	ycgR	flagellar brake protein YcgR
	?	NC_002947	= 4988204	53 (0.750)					coding (570/744 nt)	ycgR	flagellar brake protein YcgR

GAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATC  >  NC_002947/4988024‑4988318                                                                                                                                                  |                                                                                                                                                      gAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgt                                                                                                                                                   >  1:874414/1‑150 (MQ=255)   aGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgtgt                                                                                                                                                 >  1:488428/1‑150 (MQ=255)    gCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgtgt                                                                                                                                                 <  2:1094362/149‑1 (MQ=255)    gCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgtgt                                                                                                                                                 >  1:1094362/1‑149 (MQ=255)        tCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgtgt                                                                                                                                                 <  2:1245392/145‑1 (MQ=255)        tCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGgtgt                                                                                                                                                 >  1:1245392/1‑145 (MQ=255)           cAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAgcgc                                                                                                                                         <  2:1591396/150‑1 (MQ=255)              cTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTc                                                                                                                                      <  2:1538858/150‑1 (MQ=255)                  tCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCcagtgggttgcccgccttgaa                                                                                                                                  >  1:370506‑M1/1‑129 (MQ=255)                  tCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAgg                                                                                                                                  >  1:945842/1‑150 (MQ=255)                     aCATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCgg                                                                                                                               <  2:874414/150‑1 (MQ=255)                         catcCTTGACGGTTCTCACCTCAAGGGCAACGGCGCCATACGAGGCAAGCTCCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCTAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCaa                                                                                                                           >  1:1699231/1‑150 (MQ=255)                         catcCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCaa                                                                                                                           >  1:87799/1‑150 (MQ=255)                           tcCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAAcc                                                                                                                         <  2:87799/150‑1 (MQ=255)                                   ggTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggc                                                                                                                 <  1:1509136‑M2/150‑4 (MQ=255)                                       cTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtgg                                                                                                             <  2:183519/150‑1 (MQ=255)                                        tCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCt                                                                                                               >  2:1739288/1‑147 (MQ=255)                                        tCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCt                                                                                                               <  1:1739288/147‑1 (MQ=255)                                         cACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCcagtgggttgcccgccttgaagcgctcatacacctggcccagtt                                                                                                           <  2:370506‑M1/150‑45 (MQ=255)                                         cACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtggtg                                                                                                           <  1:988686/150‑1 (MQ=255)                                           ccTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGa                                                                                                         <  1:1451169/150‑1 (MQ=255)                                            cTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGg                                                                                                                   >  1:380151‑M2/1‑138 (MQ=255)                                            cTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGg                                                                                                                   <  2:380151‑M2/139‑2 (MQ=255)                                             tCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggc                                                                                                                 >  1:664418‑M2/1‑137 (MQ=255)                                             tCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggc                                                                                                                 <  2:664418‑M2/140‑4 (MQ=255)                                             tCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtggt                                                                                                            >  2:431821/1‑145 (MQ=255)                                             tCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtggt                                                                                                            <  1:431821/145‑1 (MQ=255)                                               aaGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACAcc                                                                                                     >  1:176209/1‑150 (MQ=255)                                               aaGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACAcc                                                                                                     <  2:381981/150‑1 (MQ=255)                                               aaGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACAcc                                                                                                     >  1:632387/1‑150 (MQ=255)                                                 gggCAACGGCGCCATGCGAGGCAAGCTGCCGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGa                                                                                                                                             >  2:60604/1‑108 (MQ=255)                                                 gggCAACGGCGCCATGCGAGGCAAGCTGCCGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGa                                                                                                                                             <  1:60604/108‑1 (MQ=255)                                                       cGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGa                                                                                             <  2:1011734/150‑1 (MQ=255)                                                        ggCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAg                                                                                            <  2:632387/150‑1 (MQ=255)                                                                gCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCggg                                                                                                                              >  1:1737631/1‑108 (MQ=255)                                                                gCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCggg                                                                                                                              <  2:1737631/108‑1 (MQ=255)                                                                  gAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGc                                                                                                                             <  1:898832/107‑1 (MQ=255)                                                                  gAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGc                                                                                                                             >  2:898832/1‑107 (MQ=255)                                                                  gAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATc                                                                                  >  1:31982/1‑150 (MQ=255)                                                                   aGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC                                                                                                                                                       >  1:323026‑M1/1‑80 (MQ=255)                                                                   aGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCC                                                                                                                                                       <  2:323026‑M1/80‑1 (MQ=255)                                                                       aaGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCAc                                                                             >  1:1119539/1‑150 (MQ=255)                                                                           tgctgGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAAGGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATg                                                                         >  1:451124/1‑150 (MQ=255)                                                                              tgGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCCACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAag                                                                      >  1:1087718/1‑150 (MQ=255)                                                                               ggATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtg                                                                                                              <  1:1364782/109‑1 (MQ=255)                                                                               ggATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtg                                                                                                              >  2:1364782/1‑109 (MQ=255)                                                                               ggATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGt                                                                                                <  1:353452/123‑1 (MQ=255)                                                                               ggATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGt                                                                                                >  2:353452/1‑123 (MQ=255)                                                                                     ctcGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCAt                                                               >  2:979542/1‑150 (MQ=255)                                                                                      tcGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAgc                                                                   >  1:1049087/1‑145 (MQ=255)                                                                                      tcGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAgc                                                                   <  2:1049087/145‑1 (MQ=255)                                                                                      tcGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATc                                                              >  1:1452173/1‑150 (MQ=255)                                                                                                       aCTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCTACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCgg                                             >  1:135980/1‑150 (MQ=255)                                                                                                         tGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCcagtgggttgcccgccttgaagcgctca                                                                                                                           <  1:1051155‑M1/70‑29 (MQ=255)                                                                                                         tGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCcagtgggttgcccgccttgaagcgctca                                                                                                                           >  2:1051155‑M1/1‑42 (MQ=255)                                                                                                          gcgcTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGgcgt                                          <  2:1509136/150‑1 (MQ=255)                                                                                                            gcTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGgcgtgc                                        >  2:135909/1‑150 (MQ=255)                                                                                                              ttCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGgcgtgcgt                                      >  2:1713435/1‑150 (MQ=255)                                                                                                               tCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGtt                                     >  1:711250/1‑150 (MQ=255)                                                                                                                   aGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggc                                                                                                                 >  2:1413032‑M2/1‑67 (MQ=255)                                                                                                                   aGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggc                                                                                                                 <  1:1413032‑M2/70‑4 (MQ=255)                                                                                                                    ggCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCcac                                >  2:1724309/1‑150 (MQ=255)                                                                                                                     gCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCcaca                               >  1:1570363/1‑150 (MQ=255)                                                                                                                     gCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCcaca                               >  2:1841608/1‑150 (MQ=255)                                                                                                                      cAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACaa                              <  2:1087718/150‑1 (MQ=255)                                                                                                                       aaTGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAAc                             <  2:1119539/150‑1 (MQ=255)                                                                                                                             gAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtgg                                                                                                             >  2:550615/1‑64 (MQ=255)                                                                                                                             gAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCtgg                                                                                                             <  1:550615/64‑1 (MQ=255)                                                                                                                              aaGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCg                      <  2:1570363/150‑1 (MQ=255)                                                                                                                                gACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCggg                    <  2:488428/150‑1 (MQ=255)                                                                                                                                   cGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGc                                                >  1:1894454/1‑119 (MQ=255)                                                                                                                                   cGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGc                                                <  2:1894454/119‑1 (MQ=255)                                                                                                                                     cTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGgc               <  2:711250/150‑1 (MQ=255)                                                                                                                                        gCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGgcgca            <  1:1896561/150‑1 (MQ=255)                                                                                                                                          aaCTGGGCCGGGGGTAGGGGCGCTGCAAGGCGGGAAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGgcgcagc          <  2:85980/150‑1 (MQ=255)                                                                                                                                          aaCTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttgaggtg          <  2:370506‑M2/150‑107 (MQ=255)                                                                                                                                           aCTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGGGTGCGTTTCCACAACCTGAGCGGGCAGgcgcagcg         >  2:645757/1‑150 (MQ=255)                                                                                                                                           aCTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGgcgcagcg         >  1:1157612/1‑150 (MQ=255)                                                                                                                                               ggCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAg     >  2:95377/1‑150 (MQ=255)                                                                                                                                                gCCcagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttgaggtgagcacc    <  1:1509136‑M1/150‑148 (MQ=255)                                                                                                                                                gCCcagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttga              <  2:664418‑M1/140‑138 (MQ=255)                                                                                                                                                gCCcagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttga              >  1:664418‑M1/1‑3 (MQ=255)                                                                                                                                                gCCcagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgcct                                                                                    >  2:1413032‑M1/1‑3 (MQ=255)                                                                                                                                                gCCcagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgcct                                                                                    <  1:1413032‑M1/70‑68 (MQ=255)                                                                                                                                                 ccAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGc                                                >  1:1063697/1‑105 (MQ=255)                                                                                                                                                 ccAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGc                                                <  2:1063697/105‑1 (MQ=255)                                                                                                                                                  ccagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttgag             >  1:380151‑M1/1‑1 (MQ=255)                                                                                                                                                  ccagtgggttgcccgccttgaagcgctcatacacctggcccagttgcaagcggtcttcgacattgccttcgaagcgcagtttgcagccggtggccgagatatccagcagcttgcctcgcatggcgccgttgcccttgag             <  2:380151‑M1/139‑139 (MQ=255)                                                                                                                                                  cAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATc  >  1:1462933/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GAAGCTATCGCAGCTGGTCGACATCATCCTTGACGGTGCTCACCTCAAGGGCAACGGCGCCATGCGAGGCAAGCTGCTGGATATCTCGGCCACCGGCTGCAAACTGCGCTTCGAAGGCAATGTCGAAGACCGCTTGCAACTGGGCCAGGTGTATGAGCGCTTCAAGGCGGGCAACCCACTGGGCCTGGTGGACACCATGGTCGAGCTGCGTCATCTGCACTATGAAGAGCGCATCAACACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATC  >  NC_002947/4988024‑4988318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.