| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5036230 | 28 (0.380) | 6 (0.080) | 6/242 | NT | 12.5% | intergenic (+686/‑11) | PP_4439/PP_4441 | transposase/transposase |
| ? | NC_002947 | 6155313 = | 57 (0.800) | intergenic (‑67/+139) | PP_5398/PP_5399 | transposase/hypothetical protein | |||||
CATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5036119‑5036230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGG > NC_002947/6155313‑6155459 CATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGTGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATT < 1:630559/110‑1CATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGTGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATT > 2:630559/1‑110 TTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC > 1:1777516/1‑68 TTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC < 2:1777516/68‑1 CGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTG > 1:1855249/1‑132 CGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTG < 2:1855249/132‑1 AACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGAC < 1:890312/91‑1 AACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGAC > 2:890312/1‑91 ATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACG > 1:1729153/1‑99 ATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACG < 2:1729153/99‑1 TGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATT > 1:1787057/1‑41 TGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATT < 2:1787057/41‑1 TGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGG < 2:895147/150‑1 CATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5036119‑5036230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGG > NC_002947/6155313‑6155459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |