New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5036230	28 (0.380)	6 (0.080)	6/242	NT	12.5%	intergenic (+686/‑11)	PP_4439/PP_4441	transposase/transposase
	?	NC_002947	6155313 =	57 (0.800)					intergenic (‑67/+139)	PP_5398/PP_5399	transposase/hypothetical protein

TGCACGGCGGCCACTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCT  >  NC_002947/5036083‑5036377                                                                                                                                                    |                                                                                                                                                    tGCACGGCGGCCACTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCa                                                                                                                                                   <  1:678655/150‑1 (MQ=255)           ccACTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCAt                                                                                                                                         <  1:1164491/150‑1 (MQ=255)           ccACTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCAt                                                                                                                                         >  1:995545/1‑150 (MQ=255)             ccTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCAGGCATTAAGGGCGATCGTGCCACTGCATTGTCAATCTGTTGCTATCACCCTTATTGCCAGGATTTCCATgc                                                                                                                                       <  1:1305831/149‑1 (MQ=18)             aCTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATgc                                                                                                                                       <  2:128490/150‑1 (MQ=255)             aCTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATgc                                                                                                                                       >  2:1305831/1‑150 (MQ=255)             aCTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATgc                                                                                                                                       <  1:867529/150‑1 (MQ=255)             aCTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATgc                                                                                                                                       <  1:75971/150‑1 (MQ=255)              cTACAACTCAGCGCACGTGATTCGATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGCAACTCACCTTCAGAACTCCACCATTAAGGGCGACGCTCTCCGCGTATTTTTAAGCGCACGCAATCACCCTTCTTGCCAGCATTTCCTTgcc                                                                                                                                      >  2:266186/1‑149 (MQ=255)               tACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCAt                                                                                                                                         >  1:276127/1‑146 (MQ=255)               tACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCAt                                                                                                                                         <  2:276127/146‑1 (MQ=255)                   aCTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCa                                                                                                                                                   <  1:1906712/132‑1 (MQ=255)                   aCTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCa                                                                                                                                                   >  2:1906712/1‑132 (MQ=255)                     tCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGa                                                                                                                               >  2:490475/1‑150 (MQ=255)                       aGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAg                                                                                                                             >  1:22521/1‑150 (MQ=255)                          gAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGctc                                                                                                                          <  2:22521/150‑1 (MQ=255)                                  ttCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGa                                                                                                                  <  1:1151651/150‑1 (MQ=255)                                   tCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATcc                                                                                                                    >  2:1343232/1‑147 (MQ=255)                                   tCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATcc                                                                                                                    <  1:1343232/147‑1 (MQ=255)                                    ccATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGaaa                                                                                                                <  1:469233/150‑1 (MQ=255)                                     cATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAAc                                                                                                               >  1:390324/1‑150 (MQ=255)                                       tcgtcgGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAAccc                                                                                                             >  2:1094932/1‑149 (MQ=255)                                             gttgttGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCaaa                                                                                                       >  2:638204/1‑150 (MQ=40)                                                   gtCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTAt                                                                                                                      >  1:341295/1‑129 (MQ=37)                                                   gtCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTAt                                                                                                                      <  2:341295/129‑1 (MQ=37)                                                   gtCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAg                                                                                                 >  2:144880/1‑150 (MQ=35)                                                   gtCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAg                                                                                                 >  2:1581452/1‑150 (MQ=35)                                                      cGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc                                                                                              <  1:994779/150‑1 (MQ=33)                                                      cGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc                                                                                              >  2:873464/1‑150 (MQ=33)                                                      cGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc                                                                                              >  2:743282/1‑150 (MQ=33)                                                          ggTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTc                                                                                          <  1:1581452/150‑1 (MQ=11)                                                                                 ttCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC                                                                                                                                                     <  2:1777516‑M1/68‑1 (MQ=255)                                                                                 ttCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGC                                                                                                                                                     >  1:1777516‑M1/1‑68 (MQ=255)                                                                                    cGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCtggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacgggagcagagttg                                                                                  <  2:1855249‑M1/132‑68 (MQ=255)                                                                                    cGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCtggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacgggagcagagttg                                                                                  >  1:1855249‑M1/1‑65 (MQ=255)                                                                                      aaCTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCtggagttcggaaggtgagttcgccggac                                                                                                                         <  1:890312‑M1/91‑29 (MQ=255)                                                                                      aaCTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCtggagttcggaaggtgagttcgccggac                                                                                                                         >  2:890312‑M1/1‑63 (MQ=255)                                                                                                         aTGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCtggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacg                                                                                              >  1:1729153‑M1/1‑44 (MQ=255)                                                                                                         aTGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCtggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacg                                                                                              <  2:1729153‑M1/99‑56 (MQ=255)                                                                                                                                                  tGCtggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacgggagcagagttgtactttctggacgcagggaaatcaggtgcggaagtactgcagaatttcctcaaagtttccaagctgctgcattcagacgg  <  2:895147‑M1/150‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCACGGCGGCCACTACAACTCAGCGAACGTGATTCCATCGTCGGTTGTTGTCCGAGGGTAAGCGTCCGGGGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCCAGGATTTCCATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCT  >  NC_002947/5036083‑5036377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.