New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5061570 =	70 (0.960)	4 (0.060)	4/238	NT	6.1%	coding (199/1098 nt)	PP_4459	transposase
	?	NC_002947	5061594 =	56 (0.800)					coding (223/1098 nt)	PP_4459	transposase

CAGCGACACGCGCCATGCTACGGCAGCTCCAGCGTGGCTGACCGATGCGCGGTTGAGTGACCTGCTCAAGTGTTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5061723‑5061570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCGTGTCGCTGGTATTTCTCCTGCCAG  >  NC_002947/5061594‑5061739                                                                                                                                                                                                                                                                                                              CAGCGACACGCGCCATGCTACGGCAGCTCCAGCGTGGCTGACCGATGCGCGGTTGAGTGACCTGCTCAAGTGTTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTG                                                                                                                                                        >  1:1677854/1‑150    CGACACGCGCCATGCTACGGCAGCTCCAGCGTGGCTGACCGATGCGCGGTTGAGTGACCTGCTCAAGTGTTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTGCTT                                                                                                                                                     <  1:503515/150‑1                                                                         TTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTGCTT                                                                                                                                                     >  1:1777793/1‑81                                                                         TTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTGCTT                                                                                                                                                     <  2:1777793/81‑1                                                                                                                         GCAAATCTACCAAGCCCTGAAGACGCAGTGCTTGGTAGATTTGCCGGG                                                                                                                                      >  1:1931851/1‑48                                                                                                                         GCAAATCTACCAAGCCCTGAAGACGCAGTGCTTGGTAGATTTGCCGGG                                                                                                                                      <  2:1931851/48‑1                                                                                                                               CTACCAAGCCCTGAAGACGCAGTGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCA                                                                                               >  1:1669650/1‑81                                                                                                                               CTACCAAGCCCTGAAGACGCAGTGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCA                                                                                               <  2:1669650/81‑1                                                                                                                                                       CTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGAGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCGTGTCGCTGGTATTTCTCCTGCCAG  >  1:793545/1‑150                                                                                                                                                                                                                                                                                                              CAGCGACACGCGCCATGCTACGGCAGCTCCAGCGTGGCTGACCGATGCGCGGTTGAGTGACCTGCTCAAGTGTTCGCTGCAAGGCTTCGGCAGGCAATGAAGGCTTGCGGCCTCGCCCCGGCAAATCTACCAAGCCCTGAAGACGCAGTGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5061723‑5061570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCGTGTCGCTGGTATTTCTCCTGCCAG  >  NC_002947/5061594‑5061739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.