New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5061570 =70 (0.960)4 (0.060) 4/238 NT 6.1% coding (199/1098 nt) PP_4459 transposase
?NC_002947 5061594 = 56 (0.800)coding (223/1098 nt) PP_4459 transposase

GACGAGTTCGGTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCGT  >  NC_002947/5061424‑5061716
                                                                                                                                                  |                                                                                                                                                  
ctggcaggagaaataccagcgacacgcgccatgctacggcagctccagcgtggctgaccgatgctcggttgagtgacctgctcaagtgttcgctgcaaggcttcggcaggcaatgaaggcttgcggcctcgccccggcaaatctacCAAg                                                                                                                                                 >  1:793545‑M1/147‑150 (MQ=255)
 acgaGTTCGGTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGc                                                                                                                                                >  1:1588243/1‑150 (MQ=255)
        cGGTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGGTTCAAGCACTGCgg                                                                                                                                         >  2:807614/1‑149 (MQ=255)
         ggTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCCCTgaaga                                                                                                                                        >  1:427346/1‑146 (MQ=255)
         ggTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTc                                                                                                                                        >  2:1141231/1‑150 (MQ=255)
          gTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCt                                                                                                                                       >  2:59302/1‑150 (MQ=255)
           tCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCtt                                                                                                                                      <  1:59302/150‑1 (MQ=255)
              gCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATAAAACCGCTGAGCTGACTTTCCTCTCCGTGTTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAg                                                                                                                                   <  1:726570/150‑1 (MQ=255)
                caccaTTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCa                                                                                                                                               >  2:1672851/1‑136 (MQ=255)
                caccaTTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCa                                                                                                                                               <  1:1672851/136‑1 (MQ=255)
                caccaTTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAggg                                                                                                                                 <  2:1588243/150‑1 (MQ=255)
                 accaTTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGc                                                                                                                                >  2:72820/1‑150 (MQ=255)
                   caTTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCtt                                                                                                                              >  2:1897767/1‑150 (MQ=255)
                      tAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCCCCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGt                                                                                                                           <  1:1193793/150‑1 (MQ=255)
                            gcgcGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGAttt                                                                                                                     <  2:793518/150‑1 (MQ=255)
                              gcgATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGc                                                                                                                   >  1:1485443/1‑150 (MQ=255)
                              gcgATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGc                                                                                                                   <  2:1521987/150‑1 (MQ=255)
                                gATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTGGATTTGCCg                                                                                                                 >  1:1914147/1‑150 (MQ=255)
                                gATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCg                                                                                                                 <  2:1485443/150‑1 (MQ=255)
                                    gCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGc                                                                                                             >  2:616804/1‑150 (MQ=255)
                                          taGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGcc                                                                                                       <  1:103168/149‑1 (MQ=255)
                                          gAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGcc                                                                                                       >  1:1468726/1‑150 (MQ=255)
                                                gtgtAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGc                                                                                                 <  1:72820/150‑1 (MQ=255)
                                                    aaTCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTc                                                                                             <  1:1897767/150‑1 (MQ=255)
                                                     aTCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGCCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGACTTCa                                                                                            <  1:451599/150‑1 (MQ=255)
                                                      tCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCAt                                                                                           >  1:1180127/1‑150 (MQ=255)
                                                        ttGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           >  2:1411647/1‑100 (MQ=255)
                                                        ttGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           <  1:1411647/100‑1 (MQ=255)
                                                             ggCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATtgcctgc                                                                                    <  1:1621939/150‑1 (MQ=255)
                                                                cGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGa                                                                                 >  2:919044/1‑150 (MQ=255)
                                                                 gCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGaa                                                                                >  2:515378/1‑150 (MQ=255)
                                                                 gCTAAACGTCATTCACGTAATGAAATCGCCGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGaa                                                                                <  2:792671/150‑1 (MQ=255)
                                                                  cTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAg                                                                               >  2:442533/1‑150 (MQ=255)
                                                                    cAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           <  1:210812/88‑1 (MQ=255)
                                                                    cAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           >  2:210812/1‑88 (MQ=255)
                                                                     aaGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCt                                                                            <  1:515378/150‑1 (MQ=255)
                                                                      aGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCtt                                                                           >  2:421453/1‑150 (MQ=255)
                                                                      aGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTACGAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCtt                                                                           <  1:442533/150‑1 (MQ=255)
                                                                       ggTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTg                                                                          >  1:1151345/1‑150 (MQ=255)
                                                                           aTTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGCCGCCGCAAACCGGCATTGCCTGCCGAAGCCTTGCAGc                                                                      >  2:1871491/1‑150 (MQ=255)
                                                                           aTTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGc                                                                      >  2:1625269/1‑150 (MQ=255)
                                                                           aTTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATGGCCTGCCGAAGCCTTGCAGc                                                                      >  1:99770/1‑150 (MQ=255)
                                                                           aTTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCAGCAAACCGTCATGTCCTGCCGAAGCCTGCCAGc                                                                      >  2:1870835/1‑150 (MQ=255)
                                                                             tCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGa                                                                    <  2:1151345/150‑1 (MQ=255)
                                                                                 gTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAacac                                                                >  2:1813847/1‑150 (MQ=255)
                                                                                     tGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           >  2:745513/1‑71 (MQ=255)
                                                                                     tGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGc                                                                                                                                           <  1:745513/71‑1 (MQ=255)
                                                                                       aaaTCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTc                                                                                                                                        <  2:1105534/72‑1 (MQ=255)
                                                                                       aaaTCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTc                                                                                                                                        >  1:1105534/1‑72 (MQ=255)
                                                                                          tCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAgg                                                       <  1:1141231/150‑1 (MQ=255)
                                                                                             tgcaaggcttcggcaggcaatgaaggcttgcggcctcgccccggcaaatctacCAAGCACTGCGTCTTCAGGGCTTGGTAg                                                                                                                         <  2:1669650‑M1/28‑1 (MQ=255)
                                                                                             tgcaaggcttcggcaggcaatgaaggcttgcggcctcgccccggcaaatctacCAAGCACTGCGTCTTCAGGGCTTGGTAg                                                                                                                         >  1:1669650‑M1/54‑81 (MQ=255)
                                                                                                     aCTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACcg                                            >  1:1819923/1‑150 (MQ=255)
                                                                                                      cTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACcgc                                           <  1:421453/150‑1 (MQ=255)
                                                                                                       tGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCg                                                                                                                 >  2:1494567/1‑79 (MQ=255)
                                                                                                       tGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCg                                                                                                                 <  1:1494567/79‑1 (MQ=255)
                                                                                                       tGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACcgcg                                          >  2:1515821/1‑150 (MQ=255)
                                                                                                       tGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACcgcg                                          >  1:1909631/1‑150 (MQ=255)
                                                                                                       tGGCCTCTCCGTGGTTTCCGTAACCCGATGGTGAAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACcgcg                                          >  2:1677854/1‑150 (MQ=255)
                                                                                                         gCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCa                                        >  1:102288/1‑150 (MQ=255)
                                                                                                          ccTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCCGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCAt                                       >  2:461705/1‑150 (MQ=255)
                                                                                                           ctctCCGTGGTTTCCGTCACCCGCTGGTGCAAGTGGTTTCAAGTCCTGTGTCTTCAGGGCTTTGTAGATTTGCCGGGGCGAGGTCGTAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCACCCGCGCATc                                      <  2:102288/150‑1 (MQ=255)
                                                                                                             ctcCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCggg                                                                                                               >  1:1073472/1‑75 (MQ=255)
                                                                                                             ctcCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCggg                                                                                                               <  2:1073472/75‑1 (MQ=255)
                                                                                                               ccGGGGTTTCCGTCACCCGCTGATGCAAGCGGTTTCGAGGACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACGTGCGCAGGTCACTCAACCGCGCATCGGTc                                  <  2:1085223/150‑1 (MQ=255)
                                                                                                                   ggTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCAc                                                   <  2:509817/129‑1 (MQ=255)
                                                                                                                   ggTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCAc                                                   >  1:509817/1‑129 (MQ=255)
                                                                                                                                cGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGc                 <  1:807614/150‑1 (MQ=255)
                                                                                                                                    cccggcaaatctacCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGc                                                                                                                   >  1:1931851‑M1/15‑48 (MQ=255)
                                                                                                                                    cccggcaaatctacCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGc                                                                                                                   <  2:1931851‑M1/34‑1 (MQ=255)
                                                                                                                                     gTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCa                                 >  2:894011/1‑129 (MQ=255)
                                                                                                                                     gTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCa                                 <  1:894011/129‑1 (MQ=255)
                                                                                                                                        cAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCAt         >  1:1222537/1‑150 (MQ=255)
                                                                                                                                         aaGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACTCTGGAGCTGCCGTAGCATg        <  1:1515821/150‑1 (MQ=255)
                                                                                                                                         aaGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATg        <  2:99770/150‑1 (MQ=255)
                                                                                                                                          aGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATgg       >  1:1628247/1‑150 (MQ=255)
                                                                                                                                               tttCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCgt  <  2:1652635/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
GACGAGTTCGGTCTGCCACCATTAGCCAGCGCGATGGCCGTCGAGCACGTGTAATCTTGCTGGCCGCTCAAGGTCATTCACGTAATGAAATCGCTGAGCTGACTGGCCTCTCCGTGGTTTCCGTCACCCGCTGGTGCAAGCGGTTTCAAGCACTGCGTCTTCAGGGCTTGGTAGATTTGCCGGGGCGAGGCCGCAAGCCTTCATTGCCTGCCGAAGCCTTGCAGCGAACACTTGAGCAGGTCACTCAACCGCGCATCGGTCAGCCACGCTGGAGCTGCCGTAGCATGGCGCGT  >  NC_002947/5061424‑5061716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.