New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5681938	54 (0.740)	4 (0.060)	4/232	NT	7.5%	coding (78/474 nt)	PP_4987	putative Chemotaxis protein
	?	NC_002947	= 5681955	48 (0.700)					coding (61/474 nt)	PP_4987	putative Chemotaxis protein

GCCGCACGGCGTCTCACCACCGCACGCGGCCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5681785‑5681938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcGACCGCACGC‑TGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGT  <  NC_002947/5681955‑5681808                                                                                                                                                                                                                                                                                                                 GCCGCACGGCGTCTCACCACCGCACGCGGCCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTT                                                                                                                                                           <  1:148287/150‑1    GCACGGCGTCTCACCACCGCACGCGGCCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGG                                                                                                                                                        >  2:916430/1‑150     aACGGCGTCCCACCACCGACCGCGGCCGCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCGCACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGC                                                                                                                                                       <  2:913598/149‑1                          GCGGCCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCGACCGCACGC‑TGGTGTTGCCC                                                                                                                                 >  1:887304/1‑150                                     ACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTG                                                                                                                                                          <  1:192833/115‑1                                     ACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTG                                                                                                                                                          >  2:192833/1‑115                                                                                                                        GCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCG‑TGCGGTCGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCAC                                                            >  1:102692/1‑125                                                                                                                        GCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCG‑TGCGGTCGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCAC                                                            <  2:102692/125‑1                                                                                                                                    ACTCGGCCACCGCCACGTTGGGCAACACCA‑GCGTGCGGTCGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGT                       >  2:887304/1‑150                                                                                                                                                     TTGGGCGACCGCACGC‑TGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCC      <  1:1799755/150‑1                                                                                                                                                        GGCGACCGCACGC‑TGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCA                                                                               >  1:1344754/1‑74                                                                                                                                                        GGCGACCGCACGC‑TGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCA                                                                               <  2:1344754/74‑1                                                                                                                                                         GCGACCGCACGC‑TGGTGTTGCCCCACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCACCAGGGCGACGCCGCATCGCACCTGGGGTGGATCGACTGGCGTCAGCAAGGAGCGCCGTTGATCGGTTTCGCGGCCGCGT  >  2:114493/1‑150                                                                                                                                                                                                                                                                                                                 GCCGCACGGCGTCTCACCACCGCACGCGGCCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5681785‑5681938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcGACCGCACGC‑TGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGT  <  NC_002947/5681955‑5681808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.