New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5796767	72 (0.990)	6 (0.090)	6/236	NT	7.8%	coding (1189/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	= 5796785	74 (1.070)					coding (1171/4446 nt)	gltB	L‑glutamate synthase subunit alpha

TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5796614‑5796767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGC  <  NC_002947/5796785‑5796638                                                                                                                                                                                                                                                                                                                  TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCT                                                                                                                                                            <  1:956012/150‑1    CCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGC                                                                                                                                                         <  1:76662/150‑1    CCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCAAGGCAAGGATCTGGC                                                                                                                                                         >  1:1366021/1‑150                                                                GCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGGGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCC‑G                                                                                                                                     <  1:176259/109‑1                                                                GCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGGGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCC‑G                                                                                                                                     >  2:176259/1‑109                                                                                                                        TGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTT                                                                                                                        <  1:1267811/65‑1                                                                                                                        TGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTT                                                                                                                        >  2:1267811/1‑65                                                                                                                                       TCCACGGCAAGGATCTGGCC‑CGGGCCGACACGGCCCTT‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAA                                                             <  2:1609306/109‑1                                                                                                                                       TCCACGGCAAGGATCTGGCC‑CGGGCCGACACGGCCC‑GTGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAA                                                             >  1:1609306/1‑109                                                                                                                                                      TGGCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGCCGCGCCAC                                                   <  1:1095920/104‑1                                                                                                                                                      TGGCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGCCGCGCCAC                                                   >  2:1095920/1‑104                                                                                                                                                        GCCAAGGGCCGTGTCGGGCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCAGGGTCCGTTAGCACGCCACCCGCATCCAGGCGACG   >  2:990588/1‑150                                                                                                                                                        GCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACCCCGAAACCGGCCAGATCCTCGACACCGACGCGATCGACAACCGCCTGAAGTCGC                                                        >  2:218159/1‑97                                                                                                                                                        GCCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGC                                                        <  1:218159/97‑1                                                                                                                                                         CCAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGC  >  2:527391/1‑150                                                                                                                                                                                                                                                                                                                  TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5796614‑5796767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccAAGGGCCGTGTCGGCCC‑G‑GGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGC  <  NC_002947/5796785‑5796638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.