New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5903827 =	59 (0.810)	21 (0.330)	15/216	NT	28.3%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903887 =	55 (0.870)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

GCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5903988‑5903827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903887‑5904033                                                                                                                                                                                                                                                                                                                       GCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTTGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCT                                                                                                                                                                 <  1:357944/150‑1    GGCGATCGAAGAGGGTGCTGCAGCCAACCCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG                                                                                                                                                              <  2:988988/150‑1     GCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCCAAACGAGTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                                                             >  1:1390872/1‑150     GCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                                                             >  1:1752256/1‑150       GATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGA                                                                                                                                                           >  1:753209/1‑150       GATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGGGGGA                                                                                                                                                           >  1:661679/1‑150            AAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCC                                                                                                                                                                   >  2:407575/1‑137            AAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCC                                                                                                                                                                   <  1:407575/137‑1            AAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCACTCCCACAGGGACCTCACAGCCTTCAGGTTTGTGGTGAGCCCTGTGGGAGCGGG                                                                                                                                                      <  1:1910194/150‑1                                                  AAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG                                                                                                                                                              >  2:1899308/1‑104                                                  AAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG                                                                                                                                                              <  1:1899308/104‑1                                                                                         CCTTTCGCGGTCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGG                                                                         >  1:752184/1‑150                                                                                                    CACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCC                                                              >  1:1269097/1‑150                                                                                                             TCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCT                                                                                                 >  2:724198/1‑106                                                                                                             TCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCT                                                                                                 <  1:724198/106‑1                                                                                                             TCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATC                                                     >  1:1686877/1‑150                                                                                                               CCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGGGGGGGCGGGCATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGC                                                   >  1:451922/1‑150                                                                                                                CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCC                                                                                                                                    <  1:619062/68‑1                                                                                                                CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCC                                                                                                                                    >  2:619062/1‑68                                                                                                                CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGC                                                                                                                                     <  1:713324/67‑1                                                                                                                CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGC                                                                                                                                     >  2:713324/1‑67                                                                                                                CACAGGGACCTCACAGCCTTCAGGGTTGT‑GAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCT                                                 >  2:888203/1‑150                                                                                                                 ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCT                                                 >  2:6433/1‑150                                                                                                                  CAGGTACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTG                                                                          <  2:417168/124‑1                                                                                                                  CAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTG                                                                          >  1:417168/1‑124                                                                                                                   AGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGC                                               >  2:1525857/1‑150                                                                                                                    GGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCT                                                                                                 >  1:384857/1‑99                                                                                                                    GGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCT                                                                                                 <  2:384857/99‑1                                                                                                                         CTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATC                                         <  2:1686877/150‑1                                                                                                                         CTCACAGCCTTCAGGGTTGT‑GAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCA                                                                                                                    <  1:1039875/74‑1                                                                                                                         CTCACAGCCTTCAGGGTTGT‑GAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCA                                                                                                                    >  2:1039875/1‑74                                                                                                                                     AGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGA                             <  2:1269097/150‑1                                                                                                                                                    CCTGTGGGAGCGGGCGTGCCCGCGAAAGGGTCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGG              >  1:570921/1‑150                                                                                                                                                    CCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGG              >  2:1902624/1‑150                                                                                                                                                     CTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGC             <  2:843812/150‑1                                                                                                                                                      TGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCTACGACGCTCTTCGGCCTGGCG            >  2:639236/1‑150                                                                                                                                                        TGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGC          <  1:832370/150‑1                                                                                                                                                          GGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTG        >  2:942166/1‑150                                                                                                                                                          GGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCGGCGACGCGCTCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTG        >  2:663218/1‑150                                                                                                                                                           GAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGA                                <  2:1743070/125‑1                                                                                                                                                           GAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGA                                >  1:1743070/1‑125                                                                                                                                                            AGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCGCTCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAA      <  1:1475078/150‑1                                                                                                                                                            AGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCCGCACCCGCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAA      <  2:752184/150‑1                                                                                                                                                               GGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTA   >  1:457601/1‑150                                                                                                                                                                GGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  <  2:1764644/150‑1                                                                                                                                                                                                                                                                                                                       GCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5903988‑5903827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903887‑5904033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.