| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6002391 = | 120 (1.640) | 6 (0.090) | 6/228 | NT | 5.8% | intergenic (‑35/+111) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6002465 = | 85 (1.270) | intergenic (‑109/+37) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase | |||||
TACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002546‑6002391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgcgaaCCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG > NC_002947/6002465‑6002607 TACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACC > 1:413816/1‑150 CTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCG > 1:250879/1‑150 ctGCGCCAGCGGCAGCTCGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGC > 1:573718/3‑150 TTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTT < 1:1902484/98‑1 TTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTT > 2:1902484/1‑98 GGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGT > 1:189073/1‑149 GGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGT < 2:189073/149‑1 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGC > 1:1710927/1‑114 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGC < 2:1710927/114‑1 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGG < 1:1764704/121‑1 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGG > 2:1764704/1‑121 CCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACG > 2:1452794/1‑150 CCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG > 2:819696/1‑150 CCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCAACAAGACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG > 1:1214578/1‑150 CGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGC < 1:892670/81‑1 CGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGC > 2:892670/1‑81 GCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACG < 2:1640830/147‑1 GCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACG > 1:1640830/1‑147 TACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002546‑6002391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgcgaaCCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG > NC_002947/6002465‑6002607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |