| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6127506 = | 71 (0.970) | 4 (0.060) | 4/234 | NT | 6.0% | coding (435/909 nt) | PP_5375 | LysR family transcriptional regulator |
| ? | NC_002947 | 6127531 = | 59 (0.860) | coding (410/909 nt) | PP_5375 | LysR family transcriptional regulator | |||||
CCAACAAGTCACCGTTGCCACCAGTACCGCCATGGCGTCGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑CCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6127659‑6127506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcgTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGGAATTCCGACACCTTGGGCAGTAACCACAGCGACGCCATGGCGGTACTGGTGGCAACGGTGACTTGTTGGTTGC > NC_002947/6127531‑6127663 CCAACAAGTCACCGTTGCCACCAGTACCGCCATGGCGTGGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑CCT < 1:1303258/150‑1 CAACAAGTCACCGTTGCCACCAGTACCGCCATGGCGTCGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑CCTG > 2:795997/1‑150 ACAAGTCACCGTTGCCACCAGTACCGCCATGGCGTCGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑CCTGGC > 1:1559338/1‑150 TGGCGTCGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGG‑TCG‑CTGTCGAGCCTGGCGTAATCCTTCACATGATCGTGGGCGATGA < 1:1502884/150‑1 CTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑C < 1:1811745/108‑1 CTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑C > 2:1811745/1‑108 CCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGG‑TCG‑CTGTCGAGCCTGGCGTAATCCTTC < 1:227246/111‑1 CCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGG‑TCG‑CTGTCGAGCCTGGCGTAATCCTTC > 2:227246/1‑111 TCGACAG‑CGA‑CCTGGCGTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGGAATTCCGACACCTTGGGCAGTAACCACAGCGACGCCATGGCGGTACTGGTGGCAACGGTGACTTGTTGGTTGC < 2:1502884/150‑1 TGGCGTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGG < 1:8459/65‑1 TGGCGTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGG > 2:8459/1‑65 GGCGTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGGAATTCCGACACCTTGGGCAGTA < 1:839821/86‑1 GGCGTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGGAATTCCGACACCTTGGGCAGTA > 2:839821/1‑86 CCAACAAGTCACCGTTGCCACCAGTACCGCCATGGCGTCGCTGTGGTTACTGCCCAAGGTGTCGGAATTCCAGAGTGCCCATGAAAACATCGACCTGCGGATCATCGCCCACGATCATGTGAAGGATTACGCCAGGCTCGACAG‑CGA‑CCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6127659‑6127506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcgTAATCCTTCACATGATCGTGGGCGATGATCCGCAGGTCGATGTTTTCATGGGCACTCTGGAATTCCGACACCTTGGGCAGTAACCACAGCGACGCCATGGCGGTACTGGTGGCAACGGTGACTTGTTGGTTGC > NC_002947/6127531‑6127663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |