New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5734086 =	45 (1.190)	6 (0.170)	6/246	3.5	12.5%	intergenic (‑56/+101)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5734165 =	43 (1.250)					intergenic (‑135/+22)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5734246‑5734086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACG  >  NC_002947/5734165‑5734282                                                                                                                                                                                                                                                                                         CTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCACTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTG                                                                                                                                   >  1:245125/1‑150                       CCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCACGCCCGCtcc                                                                                                                           <  1:516971/136‑4                       CCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCACGCCCGCtcc                                                                                                                           >  2:516971/1‑133                                                               CCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                           >  1:556356/1‑96                                                               CCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                           <  2:556356/96‑1                                                                                                     GCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGTAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGT                                    <  1:793995/145‑1                                                                                                     GCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGTAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGT                                    >  2:793995/1‑145                                                                                                      CTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTG                                              <  1:813455/134‑1                                                                                                      CTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTG                                              >  2:813455/1‑134                                                                                                         CCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACC                                                                             >  1:163027/1‑100                                                                                                         CCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACC                                                                             <  2:163027/100‑1                                                                                                                                                        CCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACG  <  1:124826/128‑1                                                                                                                                                        CCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACG  >  2:124826/1‑128                                                                                                                                                                                                                                                                                         CTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5734246‑5734086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACG  >  NC_002947/5734165‑5734282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.