| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5734086 = | 45 (1.190) | 6 (0.170) | 6/246 | 3.5 | 12.5% | intergenic (‑56/+101) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| ? | NC_002947 | 5734165 = | 43 (1.250) | intergenic (‑135/+22) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCA > NC_002947/5733937‑5734227 | cGTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGcc < 1:690648/150‑1 (MQ=255) tAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGcccc > 1:240021/1‑150 (MQ=255) agaaGGCCGGTGCCGATGGCGGAGCCGAGGGCTATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTc < 2:180024/148‑1 (MQ=255) ggCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGCGAACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAAGGGGCTGC‑GCAGCAGccccctgaatc < 2:624715/150‑8 (MQ=255) aTGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCt > 2:568188/1‑150 (MQ=255) ggCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTcc > 2:48995/1‑150 (MQ=255) ggAGCGGAGGGCCATG‑AACTGATGTGGCGGGCACTTAGCCCCCGCTTGAGACCTTACGCTTGTTGCATGT‑CTCGTCCTTGAATTCTTTTTGTCGTCGTGAGATTCAGGGGGCTGCTAC‑CCAGCCCCTTCGCGGGCACGCCCGCTCCcaca < 2:339404/150‑1 (MQ=255) ggCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAg < 2:600217/149‑1 (MQ=255) gggCCATGAAGCGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCCACG‑AGTGGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATg < 1:743330/150‑1 (MQ=38) cATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGgtgt > 1:560569/1‑150 (MQ=255) aTGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGtt > 1:1684/1‑150 (MQ=255) aaCGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGc < 1:329569/150‑1 (MQ=255) aCGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCa < 1:568188/150‑1 (MQ=255) gATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCt < 2:240021/150‑1 (MQ=255) aTGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTa < 1:832940/150‑1 (MQ=255) ggCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATg < 2:567195/132‑1 (MQ=255) ggCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATg > 1:567195/1‑132 (MQ=255) gCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCt < 2:1684/150‑1 (MQ=255) gggCACTTAGCCCGCGCTTGACACCTTGACCGTGTTGCATGG‑CACGTCCTTGAATTGTTTTTGTGGTCGTGACATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCtgt < 1:859783/150‑1 (MQ=39) cTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGCAg > 2:419814/1‑150 (MQ=255) cgcgCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGgcgc > 2:694230/1‑150 (MQ=255) gagaCCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCAc < 1:905042/121‑1 (MQ=255) gagaCCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCAc > 2:905042/1‑121 (MQ=255) cACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGA‑GCATCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGCGCGGGCGCGCCCGCGAAGGGCCGCCCCGCGGCCCCAgg > 1:160096/1‑150 (MQ=255) gTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGTACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGc < 1:770477/150‑1 (MQ=255) gTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGc > 1:457484/1‑150 (MQ=255) gTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGc > 2:627405/1‑150 (MQ=255) ttGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGCCGTTa > 2:297719/1‑150 (MQ=255) gTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTCGAAACCGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCtt < 1:297719/150‑1 (MQ=255) gTTTTTGTGGTCGTGAGATTCAGGGGGCTGATGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCtt < 1:590008/150‑1 (MQ=255) ttttGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTgg < 2:890698/150‑1 (MQ=255) ttGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCCCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCa < 1:722262/150‑1 (MQ=255) tgGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTa < 1:694230/150‑1 (MQ=255) gTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTaca > 1:694468/1‑150 (MQ=255) gTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTaca > 2:218233/1‑150 (MQ=255) gagaTTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTgg > 2:891316/1‑138 (MQ=255) gagaTTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTgg < 1:891316/138‑1 (MQ=255) agaTTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGTGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACccgcc > 2:245125/1‑150 (MQ=255) ttCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCGGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTCGGCAGTACACCCGCCGgc > 2:530103/1‑150 (MQ=255) ggggCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCaa < 2:457484/150‑1 (MQ=255) gggCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAg > 1:9497/1‑150 (MQ=255) ctgctgC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCg < 2:694468/150‑1 (MQ=255) tgcgcagcAGCCCCCTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGGTACAGGCTTGGCAGTACACCCGCCGGCAGCAATCCgg > 2:470907/7‑150 (MQ=39) gctgc‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGt < 1:48995/150‑1 (MQ=255) tgc‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCa > 2:639508/1‑150 (MQ=255) | CGTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGT‑CACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCA > NC_002947/5733937‑5734227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |