New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	317824 =	54 (1.100)	6 (0.130)	6/232	NT	10.6%	coding (109/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	317860 =	51 (1.120)					coding (73/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator

GGGTGGCCGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/317981‑317824 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaaggCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCAC  >  NC_002947/317860‑318008                                                                                                                                                                                                                                                                                                                            GGGTGGCCCCATCTGGCGCTACGTTGCCCAATTCGCAGGAAACCACGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑G                                                                                                                                                               <  2:1056963/150‑1  GGTGGCCGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GG                                                                                                                                                              <  2:951956/150‑1  GGTGGCCGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GG                                                                                                                                                              <  1:910005/150‑1   GTGGCCGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGC                                                                                                                                                             <  1:851393/150‑1        CGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAG                                                                                                                                                        <  1:648009/150‑1              TGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GG                                                                                                                                                              <  1:291917/138‑1              TGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GG                                                                                                                                                              >  2:291917/1‑138                                                                                            CTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG                                                                                                                                                       <  2:616669/67‑1                                                                                            CTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG                                                                                                                                                       >  1:616669/1‑67                                                                                                  GACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG                                                                                                                                                       <  1:1039392/61‑1                                                                                                  GACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG                                                                                                                                                       >  2:1039392/1‑61                                                                                                                     GCCAAGCCGTGAGCCAGACCCTGTACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCC                                           >  2:983279/1‑150                                                                                                                         AGCCTTGAGCCAGACCCTGGACCTGACCG‑‑‑‑‑‑‑GGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGG                                                        <  2:217927/133‑1                                                                                                                         AGCCTTGAGCCAGACCCTGGACCTGACCG‑‑‑‑‑‑‑GGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGG                                                        >  1:217927/1‑133                                                                                                                            CTTGAGCCAGACCCTGGACCTGGCCGGGCTCAAGGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGT                                                                                    <  1:965283/109‑1                                                                                                                            CTTGAGCCAGACCCTGGACCTGGCCGGGCTCAAGGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGT                                                                                    >  2:965283/1‑109                                                                                                                                            tACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGA                    <  1:983279/149‑1                                                                                                                                                              GCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATT         >  1:709177/1‑150                                                                                                                                                              GCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAG                                                                        <  2:1180929/87‑1                                                                                                                                                              GCTCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAG                                                                        >  1:1180929/1‑87                                                                                                                                                                TCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGC       <  1:957667/150‑1                                                                                                                                                                TCAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGC       <  2:709177/150‑1                                                                                                                                                                 CAAGGCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCG      <  2:335161/150‑1                                                                                                                                                                  AAGGCTTGGCGCAGGTGGGGGTCATCGTCCTCCCGGATGATCTGGTCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGC     <  2:851393/150‑1                                                                                                                                                                     GCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCAC  <  2:1133058/150‑1                                                                                                                                                                     GCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCAC  >  1:1251027/1‑150                                                                                                                                                                                                                                                                                                                            GGGTGGCCGCATCTGGCGCTACTTTGCCCAATTCGGAGGACCCCTCGGCATGACCACCGAGACACTGATCGACAGCCGAGCCCAGGTCATCCTGGTGGACGATGACCCCCACCTGCGCCAAGCCTTGAGCCAGACCCTGGACCTGGCCG‑‑‑‑‑‑‑GGCTCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/317981‑317824 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaaggCTTGGCGCAGGTGGGGGTCATCGTCCACCAGGATGACCTGGGCTCGGCTGTCGATCAGTGTCTCGGTGGTCATGCCGAGGGGTCCTCCGAATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCAC  >  NC_002947/317860‑318008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.