| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1188977 | 39 (0.800) | 4 (0.080) | 4/242 | NT | 8.8% | coding (273/312 nt) | PP_1038 | hypothetical protein |
| ? | NC_002947 | = 1189001 | 45 (0.950) | coding (297/312 nt) | PP_1038 | hypothetical protein | |||||
AGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1188856‑1188977‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagCCGCCAGACT‑TCATAGGCTGGCGTCTCGTACGGGTGGCTCTGCTTGAGCGCAGCGACGACCTGCACAATCAGCTCGTCAGCCACCACCAGCTCCACCTTCCACTCTTCCACCGCCTCGACCTGGCCCGCTTGCCCGA < NC_002947/1189001‑1188865 AGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGA < 1:672042/121‑1AGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGA > 2:672042/1‑121 GGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTCTCGTACGG < 1:121520/106‑1 GGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTCTCGTACGG > 2:121520/1‑106 GCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGTACGGGTGGCTCTGCTTGAGCGCAGCGACGACCTGCACAATCAGCTCGTCAGCCACCACCAGCTCCACCTTCCACTCTTCCACCGCCTCGACCTGGCCCGCTT > 1:1240959/1‑150 CCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGTACGGGTGGCTCTGCTTGAGCGCAGCGACGACCTGCACAATCAGCTCGTCAGCCACCACCAGCTCCACCTTCCACTCTTCCACCGCCTCGACCTGGCCCGCTTGCCCGA < 2:1240959/150‑1 AGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1188856‑1188977‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagCCGCCAGACT‑TCATAGGCTGGCGTCTCGTACGGGTGGCTCTGCTTGAGCGCAGCGACGACCTGCACAATCAGCTCGTCAGCCACCACCAGCTCCACCTTCCACTCTTCCACCGCCTCGACCTGGCCCGCTTGCCCGA < NC_002947/1189001‑1188865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |