| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1188977 | 39 (0.800) | 4 (0.080) | 4/242 | NT | 8.8% | coding (273/312 nt) | PP_1038 | hypothetical protein |
| ? | NC_002947 | = 1189001 | 45 (0.950) | coding (297/312 nt) | PP_1038 | hypothetical protein | |||||
TCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATC > NC_002947/1188865‑1189145 | tCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTctcgtacgggtgg < 2:1240959‑M2/150‑14 (MQ=255)tCGGGCAAGCGGGCCAGATCGAGGCTGGGGAAGATTGGAAGGTGGAGCTGGGTGTGGCTGACGAGCTGATTGTGCAGGTCGTCGGTGAGCTGAAGTAGCGACACCCGGACCAGACGCCAGCCGATGA‑AGTCTGGCGGCTCGCCGAGTTCt > 2:600725/1‑150 (MQ=255) gggCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAg > 1:1176064/1‑150 (MQ=255) ggCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGa > 2:291773/1‑150 (MQ=255) aaGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTctcgtacgggtggctctgc > 1:1240959‑M2/1‑131 (MQ=255) ggCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCCATCGGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTcgc < 1:84386/150‑1 (MQ=255) gCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCCGGACTTCTCTGCTCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTcgcg < 2:174701/150‑1 (MQ=255) cGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCgg < 1:165943/150‑1 (MQ=255) tGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCa > 1:389627/1‑150 (MQ=255) aaGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGc > 2:237997/1‑150 (MQ=255) aaGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATCCGCGGGcgtgc < 1:600725/150‑5 (MQ=255) gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGGGCTCAAGCAGAGCCACCCGTACGAGACGGCAGGCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTTGCGGGCACGACCGCGaa > 1:399729/1‑150 (MQ=255) gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaa > 1:62775/1‑150 (MQ=255) ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAgg < 1:237997/150‑1 (MQ=255) ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAgg > 1:915305/1‑150 (MQ=255) gTGGAGCGGGTGGTGGCTGACGATCTGATTTTTCTTTTCTTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAggg < 2:915305/150‑1 (MQ=255) gAGCTGGTGGTGGCTGACGAGCTGATTGGGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc < 2:551294/150‑1 (MQ=255) ctggataaCGAGCTGATTGTAGGGGTGGCACGTGCCCTCAAGCAGGGTCCCCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCa < 1:602309/143‑1 (MQ=255) tgCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa < 2:923202/116‑1 (MQ=255) tgCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa > 1:923202/1‑116 (MQ=255) aGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCt > 2:85554/1‑150 (MQ=255) cgtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCgg < 2:62775/150‑1 (MQ=255) gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc > 1:591981/1‑114 (MQ=255) gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc < 2:591981/114‑1 (MQ=255) gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc > 2:524984/1‑150 (MQ=255) gCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGc < 1:524984/150‑1 (MQ=255) gCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGc > 1:469308/1‑150 (MQ=255) cTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGTCTGGCTCCGGCCGCt > 1:1216441/1‑150 (MQ=255) tGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCtt > 2:992170/1‑150 (MQ=255) gcTCAAGCAGCCCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATTACGGTTATTCGCGGGCACGCCCTCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa < 1:390081/150‑1 (MQ=255) gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa < 2:1176064/150‑1 (MQ=255) gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGAATCAc < 2:648214/74‑1 (MQ=255) gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGAATCAc > 1:648214/1‑74 (MQ=255) tCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACa > 1:289956/1‑150 (MQ=255) ccccGTACGATACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGTCAGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCa < 1:85554/149‑1 (MQ=255) cccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGTCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc < 2:953844/116‑1 (MQ=255) cccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc > 1:953844/1‑116 (MQ=255) ccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccacc > 2:121520‑M2/1‑33 (MQ=255) ccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccacc < 1:121520‑M2/106‑74 (MQ=255) tACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAAc < 1:992170/150‑1 (MQ=255) gCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCAtctc < 2:389627/150‑1 (MQ=255) cAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAt > 2:1191547/1‑124 (MQ=255) cAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAt < 1:1191547/124‑1 (MQ=255) aGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCATCTCGaa < 2:971887/150‑1 (MQ=255) cTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTc > 2:322933/1‑122 (MQ=255) cTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTc < 1:322933/122‑1 (MQ=255) tCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCAt < 2:301286/133‑1 (MQ=255) tCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCAt > 1:301286/1‑133 (MQ=255) tGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATc > 2:1245207/1‑150 (MQ=255) | TCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATC > NC_002947/1188865‑1189145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |