New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1188977	39 (0.800)	4 (0.080)	4/242	NT	8.8%	coding (273/312 nt)	PP_1038	hypothetical protein
	?	NC_002947	= 1189001	45 (0.950)					coding (297/312 nt)	PP_1038	hypothetical protein

GCCAGTTCCGCCCGTTGGACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAAC  >  NC_002947/1188829‑1189121                                                                                                                                                     |                                                                                                                                                  gccagTTCCGCCCGTTGGACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACgaga                                                                                                                                                  <  2:417456/150‑1 (MQ=255)  ccagTTCCGCCCGTTGGACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGGGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGAc                                                                                                                                                 >  2:602309/1‑150 (MQ=255)              gTTGGACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGGCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGa                                                                                                                                     <  1:335539/150‑1 (MQ=255)                  gACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTc                                                                                                                                >  2:84386/1‑150 (MQ=255)                      gCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTggc                                                                                                                            <  1:1263435/150‑1 (MQ=255)                                     tCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTctcgtacgggtgg                                                                                                             <  2:1240959‑M2/150‑14 (MQ=255)                                     tCGGGCAAGCGGGCCAGATCGAGGCTGGGGAAGATTGGAAGGTGGAGCTGGGTGTGGCTGACGAGCTGATTGTGCAGGTCGTCGGTGAGCTGAAGTAGCGACACCCGGACCAGACGCCAGCCGATGA‑AGTCTGGCGGCTCGCCGAGTTCt                                                                                                             >  2:600725/1‑150 (MQ=255)                                       gggCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAg                                                                                                           >  1:1176064/1‑150 (MQ=255)                                        ggCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGa                                                                                                          >  2:291773/1‑150 (MQ=255)                                           aaGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGCCGCCAGACT‑TCATAGGCTGGCGTctcgtacgggtggctctgc                                                                                                       >  1:1240959‑M2/1‑131 (MQ=255)                                                           ggCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCCATCGGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTcgc                                                                                       <  1:84386/150‑1 (MQ=255)                                                            gCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCCGGACTTCTCTGCTCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTcgcg                                                                                      <  2:174701/150‑1 (MQ=255)                                                             cGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCgg                                                                                     <  1:165943/150‑1 (MQ=255)                                                                tGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCa                                                                                  >  1:389627/1‑150 (MQ=255)                                                                   aaGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGc                                                                               >  2:237997/1‑150 (MQ=255)                                                                   aaGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATCCGCGGGcgtgc                                                                               <  1:600725/150‑5 (MQ=255)                                                                          gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGGGCTCAAGCAGAGCCACCCGTACGAGACGGCAGGCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTTGCGGGCACGACCGCGaa                                                                        >  1:399729/1‑150 (MQ=255)                                                                          gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaa                                                                        >  1:62775/1‑150 (MQ=255)                                                                             ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGccgccagacttcataggctggcgtctcgtacgg                                                                                                                  >  2:121520‑M1/1‑73 (MQ=255)                                                                             ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGccgccagacttcataggctggcgtctcgtacgg                                                                                                                  <  1:121520‑M1/106‑34 (MQ=255)                                                                             ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAgg                                                                     <  1:237997/150‑1 (MQ=255)                                                                             ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAgg                                                                     >  1:915305/1‑150 (MQ=255)                                                                              gTGGAGCGGGTGGTGGCTGACGATCTGATTTTTCTTTTCTTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAggg                                                                    <  2:915305/150‑1 (MQ=255)                                                                                 gAGCTGGTGGTGGCTGACGAGCTGATTGGGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc                                                                 <  2:551294/150‑1 (MQ=255)                                                                                          ctggataaCGAGCTGATTGTAGGGGTGGCACGTGCCCTCAAGCAGGGTCCCCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCa                                                        <  1:602309/143‑1 (MQ=255)                                                                                                             tgCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa                                                                       <  2:923202/116‑1 (MQ=255)                                                                                                             tgCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa                                                                       >  1:923202/1‑116 (MQ=255)                                                                                                                aGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCt                                  >  2:85554/1‑150 (MQ=255)                                                                                                                    cgtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCgg                              <  2:62775/150‑1 (MQ=255)                                                                                                                     gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc                                                                 <  2:591981/114‑1 (MQ=255)                                                                                                                     gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc                                                                 >  1:591981/1‑114 (MQ=255)                                                                                                                     gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc                             >  2:524984/1‑150 (MQ=255)                                                                                                                        gCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGc                          >  1:469308/1‑150 (MQ=255)                                                                                                                        gCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGc                          <  1:524984/150‑1 (MQ=255)                                                                                                                         cTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGTCTGGCTCCGGCCGCt                         >  1:1216441/1‑150 (MQ=255)                                                                                                                          tGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCtt                        >  2:992170/1‑150 (MQ=255)                                                                                                                             gcTCAAGCAGCCCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATTACGGTTATTCGCGGGCACGCCCTCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa                     <  1:390081/150‑1 (MQ=255)                                                                                                                             gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa                     <  2:1176064/150‑1 (MQ=255)                                                                                                                             gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGAATCAc                                                                                                 >  1:648214/1‑74 (MQ=255)                                                                                                                             gcTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGAATCAc                                                                                                 <  2:648214/74‑1 (MQ=255)                                                                                                                               tCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACa                   >  1:289956/1‑150 (MQ=255)                                                                                                                                   gCAGAGCCACCCGTACGAGacgccagcctatgaagtctggcggctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccaccttccactcttccaccgcctcgacctggcccgctt                >  1:1240959‑M1/1‑19 (MQ=255)                                                                                                                                         ccACCCGTACGAGacgccagcctatgaagtctggcggctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccaccttccactcttccaccgcctcgacctggcccgcttgcccga          <  2:1240959‑M1/150‑138 (MQ=255)                                                                                                                                           ccccGTACGATACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGTCAGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCa       <  1:85554/149‑1 (MQ=255)                                                                                                                                            cccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGTCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc                                        <  2:953844/116‑1 (MQ=255)                                                                                                                                            cccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc                                        >  1:953844/1‑116 (MQ=255)                                                                                                                                             ccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccacc                                                 >  2:121520‑M2/1‑33 (MQ=255)                                                                                                                                             ccGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGctcgtacgggtggctctgcttgagcgcagcgacgacctgcacaatcagctcgtcagccaccaccagctccacc                                                 <  1:121520‑M2/106‑74 (MQ=255)                                                                                                                                                tACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAAc  <  1:992170/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCCAGTTCCGCCCGTTGGACGGCAGCCAGCCGTTCCTCGGGCAAGCGGGCCAGGTCGAGGCGGTGGAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGA‑AGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACATTCCACAAGCCAGCAAC  >  NC_002947/1188829‑1189121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.