New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1768955	38 (0.770)	4 (0.080)	4/240	NT	8.8%	coding (38/381 nt)	PP_5475	hypothetical protein
	?	NC_002947	= 1768978	46 (0.980)					coding (61/381 nt)	PP_5475	hypothetical protein

GCGGCTCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1768803‑1768955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaCATGCGGCCACAGTCGGCCGCCCTCGACGTAGGCGCCGAGGGTGTATTTATCGATGTTCATAGGTAGCGCAGCCCTGGGAATTCGTTGAGGTTGTACGTATTGCGTGGCCACCGGGTATCGAGCAGGTCGAAGTAGCCGGCGGTCA  <  NC_002947/1768978‑1768833                                                                                                                                                                                                                                                                                                             GCGGCTCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTTGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGT                                                                                                                                                       >  2:948423/1‑150                          CTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGA‑GGGCGGCCACAGTCGGCCGCCC                                                                                                                             <  1:573654/150‑1                                   CGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGACATGCGGCCACAGTCGGCCGCCCTCGACGTA                                                                                                                     <  2:161425/150‑1                                                                                          AACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGACATGCGGCCACAGTCGGCCGCCCTCGACGTAG                                                                                                                    <  1:882125/96‑1                                                                                          AACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGACATGCGGCCACAGTCGGCCGCCCTCGACGTAG                                                                                                                    >  2:882125/1‑96                                                                                                                                                      TCGACATGCGGCCTCTTTCGGCCGCCCTCGACGTAGGCGCCGAGGGTGTATTTATCGATGTTCATAGGTAGCGCAGCCCTGGGAATTCGTTGAGGTTGTACGTATTGCGTGGCCACCGGGTATCGAGCAGGTCGAAGTAGCCGGCGGTCA  <  2:1036650/150‑1                                                                                                                                                         ACATGCGGCCACAGTCGGCCGCCCTCGACGTAGGCGCCGAGGGTGTATTTATCGATGTTCATAGGTAGCGCAGCCCTGGGAATTCGTTGAGGTTGTACGTATTGCGTGGCCACCGGGTATCGAGCAGGTCGAAGTAGCCG         <  1:966986/140‑1                                                                                                                                                         ACATGCGGCCACAGTCGGCCGCCCTCGACGTAGGCGCCGAGGGTGTATTTATCGATGTTCATAGGTAGCGCAGCCCTGGGAATTCGTTGAGGTTGTACGTATTGCGTGGCCACCGGGTATCGAGCAGGTCGAAGTAGCCG         >  2:966986/1‑140                                                                                                                                                                                                                                                                                                             GCGGCTCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1768803‑1768955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaCATGCGGCCACAGTCGGCCGCCCTCGACGTAGGCGCCGAGGGTGTATTTATCGATGTTCATAGGTAGCGCAGCCCTGGGAATTCGTTGAGGTTGTACGTATTGCGTGGCCACCGGGTATCGAGCAGGTCGAAGTAGCCGGCGGTCA  <  NC_002947/1768978‑1768833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.