New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1768955	38 (0.770)	4 (0.080)	4/240	NT	8.8%	coding (38/381 nt)	PP_5475	hypothetical protein
	?	NC_002947	= 1768978	46 (0.980)					coding (61/381 nt)	PP_5475	hypothetical protein

CTCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGAC  >  NC_002947/1768807‑1769102                                                                                                                                                     |                                                                                                                                                    cTCCCTTACGTCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAg                                                                                                                                                    <  2:1102491/150‑1 (MQ=255)  tCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAgg                                                                                                                                                   <  2:304770/150‑1 (MQ=255)    cGTTCCGGCTGCCCAGGTCTCGGTGACCGCCGGCTTCTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGggc                                                                                                                                                 <  2:348320/150‑1 (MQ=255)            cTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTTGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACt                                                                                                                                         <  1:948423/150‑1 (MQ=255)            cTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACt                                                                                                                                         >  2:664781/1‑150 (MQ=255)            cTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACt                                                                                                                                         <  1:181228/150‑1 (MQ=255)             tGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGccacagt                                                                                                                                        >  2:574707/1‑145 (MQ=255)               cccAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACAGCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACtgtg                                                                                                                                      <  2:890381/150‑1 (MQ=255)                ccAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTgg                                                                                                                                     >  2:822703/1‑150 (MQ=255)                      ctcGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAgggcggccacagtcggccgccc                                                                                                                               <  1:573654‑M1/150‑23 (MQ=255)                           tGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGAAAGAGGCCGCATGtcga                                                                                                                          <  2:1036650‑M2/150‑5 (MQ=255)                               cgccgGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAcatgcggccacagtcggccgccctcgacgta                                                                                                                      <  2:161425‑M1/150‑32 (MQ=255)                                  cgGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGt                                                                                                                             >  2:966986‑M2/1‑139 (MQ=255)                                  cgGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGt                                                                                                                             <  1:966986‑M2/140‑2 (MQ=255)                                      tACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGc                                                                                                               <  1:1036650/150‑1 (MQ=255)                                         ttCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTgg                                                                                                            >  2:1107519/1‑150 (MQ=255)                                                tGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGa                                                                                                     >  2:1064167/1‑150 (MQ=255)                                                 gCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCAACGGGCTGTTGCTGGAg                                                                                                    <  2:1244835/150‑1 (MQ=255)                                                          ccGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGgcgc                                                                                           >  2:230125/1‑150 (MQ=255)                                                                   aCGCAATACGTACCACCTCAACGAATTCCCAGGGCTGCGCTACCTATAAACATCGATAAATACACGCTCGGCTCCTACGTCGAGGGCGATCGACTGTGACCGCATGTCGACTGCTACGGGCTGGTTCTGGAGGTTAGGCGCGACCTGGGc                                                                                  >  2:407444/1‑150 (MQ=255)                                                                   aCGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGc                                                                                  >  2:936379/1‑150 (MQ=255)                                                                              atctccTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTg                                                                       <  1:530910/146‑1 (MQ=255)                                                                                aaCCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGc                                                                     <  1:594149/150‑1 (MQ=255)                                                                                 aCCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACCCACTCGGCGCCTACGTCGAGGGCGGCAGACTCTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGcc                                                                    <  2:144757/150‑1 (MQ=255)                                                                                   cTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTGCTGTGCAGCCTGGGCTTCCCGGACTggagct                                                                  >  2:530910/1‑146 (MQ=255)                                                                                      aaCGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAcatgcggccacagtcggccgccctcgacgtag                                                                                                                     <  1:882125‑M1/96‑33 (MQ=255)                                                                                      aaCGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAcatgcggccacagtcggccgccctcgacgtag                                                                                                                     >  2:882125‑M1/1‑64 (MQ=255)                                                                                       aCGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTg                                                              <  1:1107519/150‑1 (MQ=255)                                                                                         gAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTggg                                                            <  2:987294/150‑1 (MQ=255)                                                                                           aTTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCa                                                          <  1:1046014/150‑1 (MQ=255)                                                                                               ccAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCagagc                                                      >  2:528444/1‑149 (MQ=255)                                                                                               ccAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAgaga                                                      >  2:1086073/1‑150 (MQ=255)                                                                                                    gCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATgcgc                                                 >  2:714525/1‑150 (MQ=255)                                                                                                     cTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCa                                                >  1:644114/1‑150 (MQ=255)                                                                                                        cgcTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCg                                                                                               <  1:1174204/100‑1 (MQ=255)                                                                                                        cgcTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCg                                                                                               >  2:1174204/1‑100 (MQ=255)                                                                                                            aCCTATGAACATAGATAAAGACCACCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGCTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGa                                         <  1:620664/150‑1 (MQ=255)                                                                                                             ccTATGAACATCGATAAATCCACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACCGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGTAGTGGGCAGAGATGCGCAAGGCGGAt                                        <  1:494825/150‑1 (MQ=255)                                                                                                               tATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATgg                                      >  1:1027341/1‑150 (MQ=255)                                                                                                                 tGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATggcg                                    <  2:1076827/150‑1 (MQ=255)                                                                                                                          aTAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTgcgc                           >  2:806508/1‑150 (MQ=255)                                                                                                                                  acCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGAGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGc                   >  2:905243/1‑150 (MQ=255)                                                                                                                                        ggCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAagag             >  2:733519/1‑150 (MQ=255)                                                                                                                                           gcCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCttt                               >  2:1127337/1‑129 (MQ=255)                                                                                                                                           gcCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCttt                               <  1:1127337/129‑1 (MQ=255)                                                                                                                                             cTACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgtt                                                              >  2:882125‑M2/1‑32 (MQ=255)                                                                                                                                             cTACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgtt                                                              <  1:882125‑M2/96‑65 (MQ=255)                                                                                                                                             cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCg                                           <  1:1069986/115‑1 (MQ=255)                                                                                                                                             cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCg                                           >  2:1069986/1‑115 (MQ=255)                                                                                                                                             cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGGGGGCAGAGATGGGCAAGGAGGATGGCGGCTTTTCGCGGGCCTGCGAAGAaataat        >  1:381337/1‑150 (MQ=255)                                                                                                                                              tACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccggcg       <  2:161425‑M2/150‑120 (MQ=255)                                                                                                                                                  tCGAcatgcggcctctttcggccgccctcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccggcggtca   <  2:1036650‑M1/150‑147 (MQ=255)                                                                                                                                                   cGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGAc  <  1:936379/150‑1 (MQ=255)                                                                                                                                                     acatgcggccacagtcggccgccctcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccg          <  1:966986‑M1/140‑140 (MQ=255)                                                                                                                                                     acatgcggccacagtcggccgccctcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccg          >  2:966986‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTCCGTTACGGCTGCCCAGGTCTCGGTGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGAC  >  NC_002947/1768807‑1769102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.