New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1768955	38 (0.770)	4 (0.080)	4/240	NT	8.8%	coding (38/381 nt)	PP_5475	hypothetical protein
	?	NC_002947	= 1768978	46 (0.980)					coding (61/381 nt)	PP_5475	hypothetical protein

TGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGACCTCAGTGACCCGCTGCGCAG  >  NC_002947/1768833‑1769122                                                                                                                                                  |                                                                                                                                                 tGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGAAAGAGGCCGCATGtcga                                                                                                                                              <  2:1036650‑M2/150‑5 (MQ=255)        cgGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGt                                                                                                                                                 >  2:966986‑M2/1‑139 (MQ=255)        cgGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGt                                                                                                                                                 <  1:966986‑M2/140‑2 (MQ=255)            tACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGc                                                                                                                                   <  1:1036650/150‑1 (MQ=255)               ttCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTgg                                                                                                                                >  2:1107519/1‑150 (MQ=255)                      tGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGa                                                                                                                         >  2:1064167/1‑150 (MQ=255)                       gCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCAACGGGCTGTTGCTGGAg                                                                                                                        <  2:1244835/150‑1 (MQ=255)                                ccGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGgcgc                                                                                                               >  2:230125/1‑150 (MQ=255)                                         aCGCAATACGTACCACCTCAACGAATTCCCAGGGCTGCGCTACCTATAAACATCGATAAATACACGCTCGGCTCCTACGTCGAGGGCGATCGACTGTGACCGCATGTCGACTGCTACGGGCTGGTTCTGGAGGTTAGGCGCGACCTGGGc                                                                                                      >  2:407444/1‑150 (MQ=255)                                         aCGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGc                                                                                                      >  2:936379/1‑150 (MQ=255)                                                    atctccTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTg                                                                                           <  1:530910/146‑1 (MQ=255)                                                      aaCCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGc                                                                                         <  1:594149/150‑1 (MQ=255)                                                       aCCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACCCACTCGGCGCCTACGTCGAGGGCGGCAGACTCTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGcc                                                                                        <  2:144757/150‑1 (MQ=255)                                                         cTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTGCTGTGCAGCCTGGGCTTCCCGGACTggagct                                                                                      >  2:530910/1‑146 (MQ=255)                                                             aCGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTg                                                                                  <  1:1107519/150‑1 (MQ=255)                                                               gAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTggg                                                                                <  2:987294/150‑1 (MQ=255)                                                                 aTTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCa                                                                              <  1:1046014/150‑1 (MQ=255)                                                                     ccAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCagagc                                                                          >  2:528444/1‑149 (MQ=255)                                                                     ccAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAgaga                                                                          >  2:1086073/1‑150 (MQ=255)                                                                          gCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATgcgc                                                                     >  2:714525/1‑150 (MQ=255)                                                                           cTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCa                                                                    >  1:644114/1‑150 (MQ=255)                                                                              cgcTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCg                                                                                                                   <  1:1174204/100‑1 (MQ=255)                                                                              cgcTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCg                                                                                                                   >  2:1174204/1‑100 (MQ=255)                                                                                  aCCTATGAACATAGATAAAGACCACCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGCTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGa                                                             <  1:620664/150‑1 (MQ=255)                                                                                   ccTATGAACATCGATAAATCCACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACCGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGTAGTGGGCAGAGATGCGCAAGGCGGAt                                                            <  1:494825/150‑1 (MQ=255)                                                                                     tATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATgg                                                          >  1:1027341/1‑150 (MQ=255)                                                                                       tGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATggcg                                                        <  2:1076827/150‑1 (MQ=255)                                                                                                aTAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTgcgc                                               >  2:806508/1‑150 (MQ=255)                                                                                                        acCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGAGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGc                                       >  2:905243/1‑150 (MQ=255)                                                                                                              ggCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAagag                                 >  2:733519/1‑150 (MQ=255)                                                                                                                 gcCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCttt                                                   >  2:1127337/1‑129 (MQ=255)                                                                                                                 gcCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCttt                                                   <  1:1127337/129‑1 (MQ=255)                                                                                                                   cTACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgtt                                                                                  >  2:882125‑M2/1‑32 (MQ=255)                                                                                                                   cTACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgtt                                                                                  <  1:882125‑M2/96‑65 (MQ=255)                                                                                                                   cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCg                                                               >  2:1069986/1‑115 (MQ=255)                                                                                                                   cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCg                                                               <  1:1069986/115‑1 (MQ=255)                                                                                                                   cTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGGGGGCAGAGATGGGCAAGGAGGATGGCGGCTTTTCGCGGGCCTGCGAAGAaataat                            >  1:381337/1‑150 (MQ=255)                                                                                                                    tACGTCGAGGGCGGCCGACTGTGGCCGCATGtcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccggcg                           <  2:161425‑M2/150‑120 (MQ=255)                                                                                                                         cGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGAc                      <  1:936379/150‑1 (MQ=255)                                                                                                                            gggCGGCCGACTGTGGCCGCCCcgacgtaggcgccgagggtgtatttatcgatgttcataggtagcgcagccctgggaattcgttgaggttgtacgtattgcgtggccaccgggtatcgagcaggtcgaagtagccggcggtcaccgag                    <  1:573654‑M2/150‑128 (MQ=255)                                                                                                                             ggcggcCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGCAGAgatga                             >  1:188332/1‑139 (MQ=255)                                                                                                                             ggcggcCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGAAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAgatga                             <  2:188332/139‑1 (MQ=255)                                                                                                                              gcggcCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGACCTCAg                 <  1:714525/150‑1 (MQ=255)                                                                                                                                ggcCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAg                                                                  >  2:266842/1‑99 (MQ=255)                                                                                                                                ggcCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAg                                                                  <  1:266842/99‑1 (MQ=255)                                                                                                                                         tgGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAagag                                 <  2:1225833/123‑1 (MQ=255)                                                                                                                                         tgGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGa                       <  2:289708/133‑1 (MQ=255)                                                                                                                                         tgGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGa                       >  1:289708/1‑133 (MQ=255)                                                                                                                                         tgGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCAGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAagag                                 >  1:1225833/1‑123 (MQ=255)                                                                                                                                           gCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCagag                                                                           <  2:408832/79‑1 (MQ=255)                                                                                                                                           gCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCagag                                                                           >  1:408832/1‑79 (MQ=255)                                                                                                                                            ccGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGACCTCAGTGACCCGCTGCGCa   <  2:644114/150‑1 (MQ=255)                                                                                                                                             cGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGACCTCAGTGACCCGCTGCGCAg  >  2:630353/1‑150 (MQ=255)                                                                                                                                              gCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGc                                                                <  2:546831/87‑1 (MQ=255)                                                                                                                                              gCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGc                                                                >  1:546831/1‑87 (MQ=255)                                                                                                                                                  |                                                                                                                                                 TGACCGCCGGCTACTTCGACCTGCTCGATACCCGGTGGCCACGCAATACGTACAACCTCAACGAATTCCCAGGGCTGCGCTACCTATGAACATCGATAAATACACCCTCGGCGCCTACGTCGAGGGCGGCCGACTGTGGCCGCATGTCGACTGCTACGGGCTGGTGCTGGAGGTTCGGCGCGACCTGGGCTTGCCGGACTGGCCGGAGTGGGCAGAGATGCGCAAGGCGGATGGCGGCTTTGCGCGGGCCTGCGAAGAGATGATCCAGACCTCAGTGACCCGCTGCGCAG  >  NC_002947/1768833‑1769122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.