| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2646146 = | 31 (0.630) | 4 (0.090) | 4/234 | NT | 11.6% | coding (1211/2499 nt) | PP_2316 | ABC transporter permease |
| ? | NC_002947 | 2646184 = | 32 (0.700) | coding (1173/2499 nt) | PP_2316 | ABC transporter permease | |||||
CTGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2646185‑2646146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctcgcAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGCACCAC > NC_002947/2646184‑2646330 CTGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTAC > 1:224101/1‑144CTGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTAC < 2:224101/144‑1 TGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGC > 1:251559/1‑79 TGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGC < 2:251559/79‑1 CTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCTCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGC > 2:366203/1‑150 TGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGCA > 2:100911/1‑150 CTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGCACC > 2:1103350/1‑150 CGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGCACCAC < 2:28156/150‑1 GCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGTCACCTGGCCCAGCGCTGCAATCGGCGGCA < 1:520423/73‑1 GCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGTCACCTGGCCCAGCGCTGCAATCGGCGGCA > 2:520423/1‑73 GCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGT > 1:123326/1‑39 GCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGT < 2:123326/39‑1 CTGCGAGCAGTTGGCTGGTGTACGGCGCCGCCCTGCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2646185‑2646146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctcgcAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGATACCTGCCAGCGCAGGAACGATGCCGCCAGCGGGCACCAC > NC_002947/2646184‑2646330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |