| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2646146 = | 31 (0.630) | 4 (0.090) | 4/234 | NT | 11.6% | coding (1211/2499 nt) | PP_2316 | ABC transporter permease |
| ? | NC_002947 | 2646184 = | 32 (0.700) | coding (1173/2499 nt) | PP_2316 | ABC transporter permease | |||||
AGTGGCGCACCGGCCAGCAGCTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGA > NC_002947/2645999‑2646290 | gtggtgcccgctggcggcatcgttcctgcgctggcaggtatcggtaccgggctggtggcactggctggctttgccctgccgccgattgcagcgctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCg < 2:28156‑M1/3‑1 (MQ=255)aGTGGCGCACCGGCCAGCAGCTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCg > 1:991298/1‑150 (MQ=255) ggtgcccgctggcggcatcgttcctgcgctggcaggtatcggtaccgggctggtggcactggctggctttgccctgccgccgattgcagcgctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAg > 2:1103350‑M1/146‑150 (MQ=255) tgcccgctggcggcatcgttcctgcgctggcaggtatcggtaccgggctggtggcactggctggctttgccctgccgccgattgcagcgctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCa > 2:100911‑M1/144‑150 (MQ=255) gcccgctggcggcatcgttcctgcgctggcaggtatcggtaccgggctggtggcactggctggctttgccctgccgccgattgcagagctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCAg > 2:366203‑M1/143‑150 (MQ=255) cgcACCGGCCAGCAGCTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAg < 1:845015/150‑1 (MQ=255) cGGCCAGCAGCTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGggcgg > 1:940957/1‑150 (MQ=255) cTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAg < 2:259421/135‑1 (MQ=255) cTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAg > 1:259421/1‑135 (MQ=255) gCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACt < 1:450143/150‑1 (MQ=255) gTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGTCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCg > 1:28156/1‑150 (MQ=255) aaCCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAg < 2:991298/150‑1 (MQ=255) cGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTa > 1:608510/1‑150 (MQ=255) gAGCAACAGCAGGCAGCAGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTAt > 2:1078677/1‑150 (MQ=255) gtaccgggctggtggcactggctggctttgccctgccgccgattgcagcgctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAg > 1:224101‑M1/105‑144 (MQ=255) gtaccgggctggtggcactggctggctttgccctgccgccgattgcagcgctgggccaggtgccgccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAg < 2:224101‑M1/40‑1 (MQ=255) cagcagGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGgcag > 1:832455/1‑150 (MQ=255) cagGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGcagcag < 2:1233450/150‑1 (MQ=255) ggCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGt > 1:500750/1‑150 (MQ=255) gAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCgcagca > 1:778647/1‑150 (MQ=255) aaGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCAc < 1:1078677/150‑1 (MQ=255) gTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTACGGCGCCACATGATCAGATATTGTTCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCAcgc > 1:797085/1‑150 (MQ=255) tGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGCGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTTACGGCGCAGCAcgcg > 2:76307/1‑150 (MQ=255) aCCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTggc < 1:1091259/150‑1 (MQ=255) tgccgccgattgcagcgctgggccaggtgacgccactgcgcgtgctgcgccgtgacctgctgccgatacctGc < 1:520423‑M1/2‑1 (MQ=255) tgccgccgattgcagcgctgggccaggtgacgccactgcgcgtgctgcgccgtgacctgctgccgatacctGc > 2:520423‑M1/72‑73 (MQ=255) ccAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTggcg < 1:1078873/150‑1 (MQ=255) cACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAgg > 1:1258489/1‑116 (MQ=255) cACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAgg < 2:1258489/116‑1 (MQ=255) aGGGCGAAGGTGAGCAGCAGATGGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCt < 2:988744/150‑1 (MQ=255) aGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCt < 1:1267955/150‑1 (MQ=255) gccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCa > 1:251559‑M1/41‑79 (MQ=255) gccactgcgcgtgctgcgccgtgacctgctgccgatacctGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCa < 2:251559‑M1/39‑1 (MQ=255) actgcgcgtgctgcgccgtgacctgctgccgatacctGc > 1:123326‑M1/38‑39 (MQ=255) actgcgcgtgctgcgccgtgacctgctgccgatacctGc < 2:123326‑M1/2‑1 (MQ=255) aTCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCaaa < 2:778647/150‑1 (MQ=255) aGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAagcca < 1:653886/150‑1 (MQ=255) ggCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAg > 1:128639/1‑139 (MQ=255) ggCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAg < 2:128639/139‑1 (MQ=255) gCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAagccagc < 2:500750/150‑1 (MQ=255) gcgcCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGc > 2:1065421/1‑150 (MQ=255) gcCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGcca > 1:619530/1‑150 (MQ=255) acaTGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTggc < 1:789231/95‑1 (MQ=255) acaTGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTggc > 2:789231/1‑95 (MQ=255) ccAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGa > 2:83535/1‑150 (MQ=255) | AGTGGCGCACCGGCCAGCAGCTGGCGCAGGCTGCGTAAACCGAGCAACAGCAGGCCGCCGAGCAGAAGTGCAGCGACCAGGCCGCCACCGAGCAGGGCGAAGGTGAGCAGCAGATCGAGGCTCAGGCGCCACATGATCAGGCCCAGGGCGAGCAGGGCGGCGCCGTACACCAGCCAACTGCTCGCAGGTATCGGCAGCAGGTCACGGCGCAGCACGCGCAGTGGCGGCACCTGGCCCAGCGCTGCAATCGGCGGCAGGGCAAAGCCAGCCAGTGCCACCAGCCCGGTACCGA > NC_002947/2645999‑2646290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |