New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4091366 =	44 (0.900)	6 (0.130)	6/240	NT	12.1%	intergenic (+8/‑70)	gudP/garD	glucarate transporter/galactarate dehydratase
	?	NC_002947	4091395 =	45 (0.960)					intergenic (+37/‑41)	gudP/garD	glucarate transporter/galactarate dehydratase

GACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4091504‑4091366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTGGGCGAAGGCGCCCGCT  >  NC_002947/4091395‑4091541                                                                                                                                                                                                                                                                                                 GACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGCGACCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAA                                                                                                                                          <  1:1120130/150‑1                                                 GGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCT                                                                                                                              >  1:658163/1‑114                                                 GGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCT                                                                                                                              <  2:658163/114‑1                                                                                           TTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGG                                                                                                                                                       <  1:257071/47‑1                                                                                           TTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGG                                                                                                                                                       >  2:257071/1‑47                                                                                                            ATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTGTGTCTAACATTCCGACTCGCCCCGCTACGTCCGCCTGCCCGACGACGCCAACGTCGTGGTCGTCGTCAA                               >  1:1043802/1‑150                                                                                                                GCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGGCAACGAC                           >  1:638041/1‑150                                                                                                                  CCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGG                         >  1:783893/1‑150                                                                                                                                          GCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTGGGCGAAGGCGCCCGCT  >  2:831093/1‑150                                                                                                                                          GCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGAC                                                      <  2:832130/98‑1                                                                                                                                          GCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGAATCGCCCCGCTACGTCCGCCTGCACGACGAC                                                      >  1:832130/1‑98                                                                                                                                                                                                                                                                                                 GACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4091504‑4091366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTGGGCGAAGGCGCCCGCT  >  NC_002947/4091395‑4091541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.