New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4091366 =	44 (0.900)	6 (0.130)	6/240	NT	12.1%	intergenic (+8/‑70)	gudP/garD	glucarate transporter/galactarate dehydratase
	?	NC_002947	4091395 =	45 (0.960)					intergenic (+37/‑41)	gudP/garD	glucarate transporter/galactarate dehydratase

TGGGTGCCAACGCGCTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACG  >  NC_002947/4091219‑4091514                                                                                                                                                    |                                                                                                                                                      agcgggcgccttcgcccaagccgccgtcgttgacgacgaccacgacgttgtcgtcgtcgtgcaggcggacgtagcggggcgagtcggaatgttcgatcaactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatccgc                                                                                                                                                     >  2:831093‑M1/148‑150 (MQ=255)    gTGCCAACGCGCTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCCCTGAAAAAACACGCCcg                                                                                                                                                  >  1:1090351/1‑150 (MQ=255)        cAACGCGCTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGcc                                                                                                                                              >  2:127992/1‑150 (MQ=255)            gcgcTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGt                                                                                                                                          >  2:14600/1‑150 (MQ=255)             cgcTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTc                                                                                                                                         <  2:1090351/150‑1 (MQ=255)                  gTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCgg                                                                                                                                            <  2:197224/142‑1 (MQ=255)                  gTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCgg                                                                                                                                            >  1:197224/1‑142 (MQ=255)                        ccgtcgttgacgacgaccacgacgttgtcgtcgtcgtgcaggcggacgtagcggggcgagtcggaatgttcgatcaactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatcCGCCCGCGCCGGGTCG‑CCCGGCATgg                                                                                                                             >  1:783893‑M1/125‑150 (MQ=255)                          gtcgttgccgacgaccacgacgttgtcgtcgtcgtgcaggcggacgtagcggggcgagtcggaatgttcgatcaactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatcCGCCCGCGCCGGGTCG‑CCCGGCATGGGc                                                                                                                           >  1:638041‑M1/123‑150 (MQ=255)                              ttgacgacgaccacgacgttggcgtcgtcgggcaggcggacgtagcggggcgagtcggaatgttagacacactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatcCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGAt                                                                                                                       >  1:1043802‑M1/119‑150 (MQ=255)                              aGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGAt                                                                                                                       >  1:524816/1‑150 (MQ=255)                                  aTCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTAc                                                                                                                   <  1:1155080/150‑1 (MQ=255)                                      ggTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACaaaa                                                                                                               >  1:787347/1‑150 (MQ=255)                                        ttATCGTCGGCCCCATCAAGCGTATCGTATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGc                                                                                                             >  1:1266227/1‑150 (MQ=255)                                         tATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCCGCTCCCGTCACTGAAAAAACACGCCCCCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGcc                                                                                                            >  1:7766/1‑150 (MQ=255)                                         tATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGcc                                                                                                            <  1:14600/150‑1 (MQ=255)                                           tcgtcgGCCCCACCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTg                                                                                                          <  1:1024248/150‑1 (MQ=255)                                                 gCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAAcc                                                                                                    >  1:1087406/1‑150 (MQ=255)                                                    ccATCAAGCGTATCGAATTGCGTGATGCTGCCCCGCCGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGa                                                                                                 <  1:1093432/150‑1 (MQ=255)                                                    ccATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGa                                                                                                 <  1:600156/150‑1 (MQ=255)                                                     gtcgtcgtgcaggcggacgtagcggggcgattcggaatgttcgatcaactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatccgc                                                                                                                                                     >  1:832130‑M1/96‑98 (MQ=255)                                                     gtcgtcgtgcaggcggacgtagcggggcgagtcggaatgttcgatcaactgcatgtttgggccctacttgtcaggttctcaggcttttgtacatccgc                                                                                                                                                     <  2:832130‑M1/3‑1 (MQ=255)                                                        cAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAg                                                                                             <  2:524816/150‑1 (MQ=255)                                                             gTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAgcg                                                                                        <  1:935203/150‑3 (MQ=255)                                                                     ttGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGcc                                                                                                            <  2:867410/122‑1 (MQ=255)                                                                     ttGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGcc                                                                                                            >  1:867410/1‑122 (MQ=255)                                                                           gATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGt                                                                          <  2:508548/150‑1 (MQ=255)                                                                                tgcCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATc                                                                     >  1:117316/1‑150 (MQ=255)                                                                                   cccGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGaa                                                                  <  1:127992/150‑1 (MQ=255)                                                                                         gCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCATGAGAACCTGACAAGTAGGGCCCAAACAt                                                                               <  2:306086/131‑1 (MQ=255)                                                                                         gCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCATGAGAACCTGACAAGTAGGGCCCAAACAt                                                                               >  1:306086/1‑131 (MQ=255)                                                                                          ccACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCg                                                           >  2:659552/1‑150 (MQ=255)                                                                                            acacGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTcc                                                            >  1:392126/1‑147 (MQ=255)                                                                                            acacGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTcc                                                            <  2:392126/147‑1 (MQ=255)                                                                                              acGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAAc                                                                 >  2:366867/1‑140 (MQ=255)                                                                                              acGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAAc                                                                 <  1:366867/140‑1 (MQ=255)                                                                                                   gAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGAc                                                                                                <  2:619172/104‑1 (MQ=255)                                                                                                   gAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGAc                                                                                                >  1:619172/1‑104 (MQ=255)                                                                                                     gCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGc                                                <  2:1133275/150‑1 (MQ=255)                                                                                                                          ggCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCacgacgac                           <  2:960820/150‑1 (MQ=255)                                                                                                                           gCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCac                                 >  2:650893/1‑143 (MQ=255)                                                                                                                           gCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCac                                 <  1:650893/143‑1 (MQ=255)                                                                                                                            ccAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCAcgacgacga                         >  2:1124016/1‑150 (MQ=255)                                                                                                                             aggttctcaggcttttgtacatcCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTcc                                                            <  2:658163‑M1/91‑1 (MQ=255)                                                                                                                             aggttctcaggcttttgtacatcCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTcc                                                            >  1:658163‑M1/24‑114 (MQ=255)                                                                                                                                   ccGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgtc                  <  2:1087406/150‑1 (MQ=255)                                                                                                                                    cGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGa                                                          <  2:59557/109‑1 (MQ=255)                                                                                                                                    cGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGa                                                          >  1:59557/1‑109 (MQ=255)                                                                                                                                    cGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgtcg                 >  2:676551/1‑150 (MQ=255)                                                                                                                                         ttttgtacatcCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGTCGCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtc            <  1:1120130‑M1/139‑1 (MQ=255)                                                                                                                                         cTGAAAAAACACGCCCGCGTCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtc            <  2:1169499/150‑1 (MQ=255)                                                                                                                                         cTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGt                                                                          >  2:327309/1‑88 (MQ=255)                                                                                                                                         cTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGt                                                                          <  1:327309/88‑1 (MQ=255)                                                                                                                                                   acGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAacg  >  1:682220/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TGGGTGCCAACGCGCTGGTCGCGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACG  >  NC_002947/4091219‑4091514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.