| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4240195 = | 74 (1.510) | 5 (0.110) | 4/226 | NT | 7.7% | coding (139/900 nt) | PP_3717 | LuxR family transcriptional regulator |
| ? | NC_002947 | 4240236 = | 53 (1.200) | coding (98/900 nt) | PP_3717 | LuxR family transcriptional regulator | |||||
TTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4240352‑4240195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgc‑‑‑‑‑‑gcccATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGAT > NC_002947/4240236‑4240383 TTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCA < 2:1113662/150‑1TTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCA > 2:411213/1‑150 CCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC > 1:435297/1‑150 CCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCTGGCCCATGGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACA > 2:340430/1‑150 AATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAG < 1:209388/123‑1 AATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAG > 2:209388/1‑123 AATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGC < 1:1176088/100‑1 AATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGC > 2:1176088/1‑100 TGCAGCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGG > 1:1252014/1‑150 GCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCG > 1:46938/1‑108 GCGC‑‑‑‑‑‑GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCG < 2:46938/108‑1 GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCG < 1:244916/141‑1 GCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCG > 2:244916/1‑141 CCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGAT > 1:1031494/1‑150 CCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCA > 1:402155/1‑93 CCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCA < 2:402155/93‑1 TTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGC‑‑‑‑‑‑GCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4240352‑4240195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgc‑‑‑‑‑‑gcccATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGAT > NC_002947/4240236‑4240383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |