New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4336960	38 (0.770)	4 (0.090)	4/238	NT	10.8%	coding (299/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337011	30 (0.640)					coding (248/885 nt)	PP_3811	LysR family transcriptional regulator

CGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4336828‑4336960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgacaTCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCTGCCTGCTGACCGAGTTTCTGCAGTTGCACCCCCAGGTTGATGTGGAGGTAGACCTGAGCGACCGCGCTGT  <  NC_002947/4337011‑4336864                                                                                                                                                                                                                                                                                           CGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACATCAGCGGCCAGGCCCAG                                                                                                                                     >  1:867291/1‑150                                     ACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTG                                                                                                 <  2:867291/150‑1                                                           CCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTT                                                                                           >  1:1212700/1‑134                                                           CCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTT                                                                                           <  2:1212700/134‑1                                                                                                                                 CGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCTGCCTGCTGACCGAGTTTCTGCAGTTGCACCCCCAGGTTGATGTGGAGGTAGACCTGAGCGACCGCGC     <  1:37424/150‑1                                                                                                                                    CATCAGCGGCCAGGCCCAGGTCCTGCTCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCTGCCTGCTGACCGAGTTTCTGCAGTTGCACCCCCAGGTTGATGTGGAGGTAGACCTGAGCGACCGCGCTGT  <  1:97516/150‑1                                                                                                                                    CATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCTGCCTGCTGACCGAGTTTCTGCAGTTGCACCCCCAGGTTGATGTGGAGGTAGACCTGAGCGACCGCGCTGT  <  1:451607/150‑1                                                                                                                                                                                                                                                                                           CGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4336828‑4336960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgacaTCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCTGCCTGCTGACCGAGTTTCTGCAGTTGCACCCCCAGGTTGATGTGGAGGTAGACCTGAGCGACCGCGCTGT  <  NC_002947/4337011‑4336864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.