New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4336960	38 (0.770)	4 (0.090)	4/238	NT	10.8%	coding (299/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337011	30 (0.640)					coding (248/885 nt)	PP_3811	LysR family transcriptional regulator

ACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGAC  >  NC_002947/4336864‑4337158                                                                                                                                                    |                                                                                                                                                    acaGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtg                                                                                                                                                   <  1:451607‑M2/150‑3 (MQ=255) acaGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGAGCAGGACCTGGGCCTGGCCGCTGAtg                                                                                                                                                   <  1:97516‑M2/150‑3 (MQ=255)    gcgcGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcg                                                                                                                                                <  1:37424‑M2/150‑6 (MQ=255)        ggTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCATGACCTGGGCCTGGCCGCTGATGTCGTGtt                                                                                                                                            >  2:622042/1‑150 (MQ=255)        ggTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGtt                                                                                                                                            <  2:1205129/150‑1 (MQ=255)                  gTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACctgctg                                                                                                                                  >  2:481874/1‑150 (MQ=255)                     tACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTTCAc                                                                                                                               >  1:315721/1‑150 (MQ=255)                       ccTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACtt                                                                                                                             <  2:1075025/150‑1 (MQ=255)                          ccACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAc                                                                                                                          >  2:20981/1‑150 (MQ=255)                           cacaTCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAcc                                                                                                                         >  2:1284881/1‑150 (MQ=255)                                cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                                                                           >  1:134476/1‑127 (MQ=255)                                cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                                                                           <  2:134476/127‑1 (MQ=255)                                cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAACcagca                                                                                                                    <  2:639177/150‑1 (MQ=255)                                 aaCCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCcagcag                                                                                                                   <  2:856605/150‑1 (MQ=255)                                 aaCCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCcagcag                                                                                                                   <  1:105115/150‑1 (MQ=255)                                               aCTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACt                                                                                                     <  1:266674/150‑1 (MQ=255)                                                        aCTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTagtagt                                                                                            <  1:1017887/150‑1 (MQ=255)                                                        aCTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTagtagt                                                                                            <  1:366225/150‑1 (MQ=255)                                                               cagcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGccc                                                                                     <  2:670325/150‑1 (MQ=255)                                                                agcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGAc                                                                                                      <  2:718829/132‑1 (MQ=255)                                                                agcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCGTCACTTCACCCAGCAGGCGCAGGGCCGAc                                                                                                      >  1:718829/1‑132 (MQ=255)                                                                        gCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgt                                                                            <  2:621360/150‑1 (MQ=255)                                                                             ggTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCAt                                                                       >  2:1202112/1‑150 (MQ=255)                                                                              gTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAccc                                                                                                                        >  1:587164/1‑100 (MQ=255)                                                                              gTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAccc                                                                                                                        <  2:587164/100‑1 (MQ=255)                                                                                      tGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                                                                           <  1:410930/73‑1 (MQ=255)                                                                                      tGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                                                                           >  2:410930/1‑73 (MQ=255)                                                                                          aaaCGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggagg                                                                          <  2:1212700‑M2/134‑76 (MQ=255)                                                                                          aaaCGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggagg                                                                          >  1:1212700‑M2/1‑59 (MQ=255)                                                                                              gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgtg                                                                           >  1:563108/1‑129 (MQ=255)                                                                                              gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgtg                                                                           <  2:563108/129‑1 (MQ=255)                                                                                              gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAg                                                      >  2:274321/1‑150 (MQ=255)                                                                                                cAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgctgt                                                    <  2:867291‑M2/150‑98 (MQ=255)                                                                                                   cggcgCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGtt                                                 <  1:481874/150‑1 (MQ=255)                                                                                                     gcgcgcTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGa                                               <  2:752523/150‑1 (MQ=255)                                                                                                        cgcTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGgcg                                                                                                                >  1:1030796/1‑82 (MQ=255)                                                                                                        cgcTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGgcg                                                                                                                <  2:1030796/82‑1 (MQ=255)                                                                                                               gcgcAAGGTGCCGAGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCAc                                     <  2:97516/150‑1 (MQ=255)                                                                                                                              cAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGctcctc                      <  2:37424/150‑1 (MQ=255)                                                                                                                                    cTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgctgtggacctgattggtgaaggctatgacctggcgctgcg                >  1:867291‑M2/1‑17 (MQ=255)                                                                                                                                       ggCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCAt             <  1:1202112/150‑1 (MQ=255)                                                                                                                                         ccTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTCGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCa           <  1:20981/150‑1 (MQ=255)                                                                                                                                             gCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGgcg       >  2:1794/1‑150 (MQ=255)                                                                                                                                                  tGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGGGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGAc  >  2:182866/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGAC  >  NC_002947/4336864‑4337158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.