New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4336960	38 (0.770)	4 (0.090)	4/238	NT	10.8%	coding (299/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337011	30 (0.640)					coding (248/885 nt)	PP_3811	LysR family transcriptional regulator

CAGTGCACCAATCCGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCG  >  NC_002947/4336815‑4337108                                                                                                                                                  |                                                                                                                                                     cAGTGCACCAATCCGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAgcgg                                                                                                                                                  >  1:1203072/1‑150 (MQ=255)              cGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAtcagcggccaggcccag                                                                                                                                     >  1:867291‑M1/1‑133 (MQ=255)                            aTAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCCCATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGGCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAg                                                                                                                       >  1:358002/1‑150 (MQ=255)                               gCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCCCAggtc                                                                                                                    <  2:1203072/150‑3 (MQ=255)                                ccTTCACCACTCCGATCCTCAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGAcc                                                                                                                   >  2:1017887/1‑150 (MQ=255)                                 cTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCt                                                                                                                  <  2:803989/150‑1 (MQ=255)                                   tCACCAATGCGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGGCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTgg                                                                                                                <  2:358002/150‑1 (MQ=255)                                     aCCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTgg                                                                                                                <  2:809580/148‑1 (MQ=255)                                     aCCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTgg                                                                                                                >  1:809580/1‑148 (MQ=255)                                        aaTCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTg                                                                                                           >  1:1205129/1‑150 (MQ=255)                                             ggTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACGGCAGGAGCTGGGGCGGGAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGc                                                                                                      <  1:1016923/150‑1 (MQ=255)                                              gTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCt                                                                                                     >  1:1075025/1‑150 (MQ=255)                                              gTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCt                                                                                                     >  1:752523/1‑150 (MQ=255)                                               tCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTg                                                                                                    >  2:366225/1‑150 (MQ=255)                                                  acaGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAtcagcggccaggcccaggtcctgcgcggcaccttgcgcctgagcgcgccgctg                                                                                                 <  2:867291‑M1/150‑54 (MQ=255)                                                  acaGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtg                                                                                                 <  1:451607‑M2/150‑3 (MQ=255)                                                  acaGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGAGCAGGACCTGGGCCTGGCCGCTGAtg                                                                                                 <  1:97516‑M2/150‑3 (MQ=255)                                                     gcgcGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcg                                                                                              <  1:37424‑M2/150‑6 (MQ=255)                                                         ggTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCATGACCTGGGCCTGGCCGCTGATGTCGTGtt                                                                                          >  2:622042/1‑150 (MQ=255)                                                         ggTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGtt                                                                                          <  2:1205129/150‑1 (MQ=255)                                                                   gTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACctgctg                                                                                >  2:481874/1‑150 (MQ=255)                                                                      tACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTTCAc                                                                             >  1:315721/1‑150 (MQ=255)                                                                        ccTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAtcagcggccaggcccaggtcctgcgcggcaccttgcgcctgagcgcgccgctgtcgttt                                                                                           <  2:1212700‑M1/134‑60 (MQ=255)                                                                        ccTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAtcagcggccaggcccaggtcctgcgcggcaccttgcgcctgagcgcgccgctgtcgttt                                                                                           >  1:1212700‑M1/1‑75 (MQ=255)                                                                        ccTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACtt                                                                           <  2:1075025/150‑1 (MQ=255)                                                                          tCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAAGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCt                                                                                                            <  2:965027/115‑1 (MQ=255)                                                                          tCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAAGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCt                                                                                                            >  1:965027/1‑115 (MQ=255)                                                                           ccACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAc                                                                        >  2:20981/1‑150 (MQ=255)                                                                            cacaTCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAcc                                                                       >  2:1284881/1‑150 (MQ=255)                                                                                 cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                         >  1:134476/1‑127 (MQ=255)                                                                                 cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                         <  2:134476/127‑1 (MQ=255)                                                                                 cAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAACcagca                                                                  <  2:639177/150‑1 (MQ=255)                                                                                  aaCCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCcagcag                                                                 <  1:105115/150‑1 (MQ=255)                                                                                  aaCCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCcagcag                                                                 <  2:856605/150‑1 (MQ=255)                                                                                                aCTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACt                                                   <  1:266674/150‑1 (MQ=255)                                                                                                         aCTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTagtagt                                          <  1:1017887/150‑1 (MQ=255)                                                                                                         aCTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTagtagt                                          <  1:366225/150‑1 (MQ=255)                                                                                                                cagcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGccc                                   <  2:670325/150‑1 (MQ=255)                                                                                                                 agcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGAc                                                    <  2:718829/132‑1 (MQ=255)                                                                                                                 agcagGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCGTCACTTCACCCAGCAGGCGCAGGGCCGAc                                                    >  1:718829/1‑132 (MQ=255)                                                                                                                         gCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgt                          <  2:621360/150‑1 (MQ=255)                                                                                                                              ggTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCAt                     >  2:1202112/1‑150 (MQ=255)                                                                                                                               gTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAccc                                                                      <  2:587164/100‑1 (MQ=255)                                                                                                                               gTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCAccc                                                                      >  1:587164/1‑100 (MQ=255)                                                                                                                                       tGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                         <  1:410930/73‑1 (MQ=255)                                                                                                                                       tGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTc                                                                                         >  2:410930/1‑73 (MQ=255)                                                                                                                                           aaaCGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggagg                        <  2:1212700‑M2/134‑76 (MQ=255)                                                                                                                                           aaaCGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggagg                        >  1:1212700‑M2/1‑59 (MQ=255)                                                                                                                                              cGACAtcagcggccaggcccaggtcctgcgcggcaccttgcgcctgagcgcgccgctgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgc     <  1:37424‑M1/150‑146 (MQ=255)                                                                                                                                               gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgtg                         >  1:563108/1‑129 (MQ=255)                                                                                                                                               gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAgtggcgtg                         <  2:563108/129‑1 (MQ=255)                                                                                                                                               gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAg    >  2:274321/1‑150 (MQ=255)                                                                                                                                                 cAtcagcggccaggcccaggtcctgctcggcaccttgcgcctgagcgcgccgctgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgctgt  <  1:97516‑M1/150‑149 (MQ=255)                                                                                                                                                 cAtcagcggccaggcccaggtcctgcgcggcaccttgcgcctgagcgcgccgctgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgctgt  <  1:451607‑M1/150‑149 (MQ=255)                                                                                                                                                 cAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGAtgtcgtttgccatggcgcacctgggctgcctgctgaccgagtttctgcagttgcacccccaggttgatgtggaggtagacctgagcgaccgcgctgt  <  2:867291‑M2/150‑98 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CAGTGCACCAATCCGCAGCGCCAGGTCATAGCCTTCACCAATCAGGTCCACAGCGCGGTCGCTCAGGTCTACCTCCACATCAACCTGGGGGTGCAACTGCAGAAACTCGGTCAGCAGGCAGCCCAGGTGCGCCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCG  >  NC_002947/4336815‑4337108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.