New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4560816	50 (1.020)	5 (0.100)	5/244	NT	9.4%	coding (777/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	= 4560831	48 (1.000)					coding (762/1404 nt)	PP_4048	hypothetical protein

CCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4560765‑4560816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccCGCGCAGGTTGCGCAGGCCGGGGTGCATGCGCAAAAGCCGGAGCCCATGGCCATGAGTGCTGGGCGGGTGACCTCTGGCATCGGCATGCGCCCACGTTACCTTGAGCGGTCCGAGGGTGCGCTCGGCCCGCCCGTGCCCAC  <  NC_002947/4560831‑4560691                                                                                                                                                                                                   CCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCCGCGCAGGTTGCGCAGGCCGGG                                                                                                                         >  1:590139/1‑74 CCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCCGCGCAGGTTGCGCAGGCCGGG                                                                                                                         <  2:590139/74‑1                   CATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCCGCGCAGGTTGCGCAGGCCGGGGTGC                                                                                                                     >  1:544674/1‑60                   CATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCCGCGCAGGTTGCGCAGGCCGGGGTGC                                                                                                                     <  2:544674/60‑1                                            ACCCCGGCCTGCGCAACCTGCGCGGGCAGGGGTGCATGCGCAAAAGCCGGAGCCCATGGCCATGAGTGCTGGGCGGGTGACCTCTGGCATCGGCATGCGCCCACGTTACCTTGAGCGGTCCGAGGGTGCGCTCGGCCCGCCCGTGCCCAC  >  2:1041838/1‑150                                                                                                                                                                                                   CCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4560765‑4560816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccCGCGCAGGTTGCGCAGGCCGGGGTGCATGCGCAAAAGCCGGAGCCCATGGCCATGAGTGCTGGGCGGGTGACCTCTGGCATCGGCATGCGCCCACGTTACCTTGAGCGGTCCGAGGGTGCGCTCGGCCCGCCCGTGCCCAC  <  NC_002947/4560831‑4560691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.