New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4560816	50 (1.020)	5 (0.100)	5/244	NT	9.4%	coding (777/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	= 4560831	48 (1.000)					coding (762/1404 nt)	PP_4048	hypothetical protein

CGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAC  >  NC_002947/4560690‑4560963                                                                                                                                              |                                                                                                                                     cGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTc                                                                                                                              >  1:524148/1‑150 (MQ=255)  gTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCTGCCCGCGCAGGTTGCGCAggccggggt                                                                                                                             >  2:1041838‑M2/1‑141 (MQ=255)     ggCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTg                                                                                                                          <  2:1030102/150‑1 (MQ=255)        aCGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCACCCTGCGCGGGCAGGTCGCTGGcc                                                                                                                       >  2:126367/1‑150 (MQ=255)        aCGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGcc                                                                                                                       >  1:278612/1‑150 (MQ=255)                 ccGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCa                                                                                                                <  2:268492/148‑1 (MQ=255)                 ccGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCa                                                                                                                >  1:268492/1‑148 (MQ=255)                           ccTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGc                                                                                                              >  2:761752/1‑140 (MQ=255)                           ccTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGc                                                                                                              <  1:761752/140‑1 (MQ=255)                            cTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTGCAGCGCCTTGGCCAg                                                                                                   >  1:768448/1‑150 (MQ=255)                             tCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGc                                                                                                  >  1:225987/1‑150 (MQ=255)                                  acgcgCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTTATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCGCCAGCGCCTGGGCCAGCCTGGc                                                                                             >  2:500685/2‑150 (MQ=255)                                                             gATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGAt                                                                  >  2:725908/1‑150 (MQ=255)                                                                  cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTTCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTCGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTccc                                                             >  1:1233918/1‑150 (MQ=255)                                                                  cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCCAGTCGCTGGCCTTCTCCAGCACCTTGGTCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTccc                                                             >  2:364059/1‑150 (MQ=255)                                                                  cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             <  1:254103/134‑1 (MQ=255)                                                                  cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             >  2:254103/1‑134 (MQ=255)                                                                    gagGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGc                                                           >  2:230617/1‑150 (MQ=255)                                                                      ggTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  1:230617/150‑1 (MQ=255)                                                                      ggTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  2:1027871/150‑1 (MQ=255)                                                                           cccGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCAt                                                    >  2:1165382/1‑150 (MQ=255)                                                                                   gCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGc                                            >  2:25777/1‑150 (MQ=255)                                                                                       tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:1156976/1‑150 (MQ=255)                                                                                       tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:821181/1‑150 (MQ=255)                                                                                       tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:389449/1‑150 (MQ=255)                                                                                         aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             >  2:957540/1‑111 (MQ=255)                                                                                         aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             <  1:957540/111‑1 (MQ=255)                                                                                         aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         <  1:1230371/147‑1 (MQ=255)                                                                                         aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         >  2:1230371/1‑147 (MQ=255)                                                                                              cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGc                                                                                                                        <  1:603857/63‑1 (MQ=255)                                                                                              cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGc                                                                                                                        >  2:603857/1‑63 (MQ=255)                                                                                              cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGaa                                 <  1:510173/150‑1 (MQ=255)                                                                                               aTGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAAc                                >  2:909362/1‑150 (MQ=255)                                                                                                 gggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTg                              >  2:425002/1‑150 (MQ=255)                                                                                                  ggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         >  2:475438/1‑138 (MQ=255)                                                                                                  ggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         <  1:475438/138‑1 (MQ=255)                                                                                                   gCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgcg                            >  2:959114/1‑150 (MQ=255)                                                                                                    cTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTa                                    >  2:1183445/1‑141 (MQ=255)                                                                                                    cTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTa                                    <  1:1183445/141‑1 (MQ=255)                                                                                                       cGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTc                        <  1:959114/150‑1 (MQ=255)                                                                                                       cGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTc                        >  1:1263891/1‑150 (MQ=255)                                                                                                         gCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCTGCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgc                             >  1:1185603/1‑143 (MQ=255)                                                                                                         gCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgc                             <  2:1185603/143‑1 (MQ=255)                                                                                                           ttttGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATg                    <  1:1165382/150‑1 (MQ=255)                                                                                                                     gCACCCCGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatg                                                                                                    <  2:544674‑M2/60‑35 (MQ=255)                                                                                                                     gCACCCCGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatg                                                                                                    >  1:544674‑M2/1‑26 (MQ=255)                                                                                                                      cACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCAt                                                                         <  1:490370/86‑1 (MQ=255)                                                                                                                      cACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCAt                                                                         >  2:490370/1‑86 (MQ=255)                                                                                                                        ccccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  2:545686/100‑1 (MQ=255)                                                                                                                        ccccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         >  1:545686/1‑100 (MQ=255)                                                                                                                         cccGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatggccatgagtgctgggcgg                                                                                  <  2:590139‑M2/74‑53 (MQ=255)                                                                                                                         cccGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatggccatgagtgctgggcgg                                                                                  >  1:590139‑M2/1‑22 (MQ=255)                                                                                                                          ccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCAcc     <  2:1263891/150‑1 (MQ=255)                                                                                                                             gCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAc  <  2:1233918/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                     CGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAC  >  NC_002947/4560690‑4560963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.