New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5007888 =	41 (0.840)	3 (0.060)	3/236	NT	7.3%	intergenic (+222/‑677)	PP_5674/PP_4411	hypothetical protein/hypothetical protein
	?	NC_002947	5007917 =	37 (0.800)					intergenic (+251/‑648)	PP_5674/PP_4411	hypothetical protein/hypothetical protein

GCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5007924‑5007888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC  >  NC_002947/5007917‑5008065                                                                                                                                                                                            GCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGGACCAAGTGAGTGCCGGCTGAATGCGAAGTCACCGGGACAAGCGTCATTACCCGGTCCGC                                      >  1:879103/1‑150        GAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAG                                                                                           >  1:240679/1‑90        GAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAG                                                                                           <  2:240679/90‑1                               GGCGCCTCGGCTTGCGCATAGGAAGTGGGCCCGCCATGGCTGCGGCATATCTATGTCGCGTACCAAGGGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGCCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGC        <  2:92698/150‑1                                 CGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTA      <  2:183600/150‑1                                    CTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGAT   <  2:963707/150‑1                                     TCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC  >  1:1091622/1‑150                                                                                                                                                                                            GCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5007924‑5007888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC  >  NC_002947/5007917‑5008065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.