New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5007888 =	41 (0.840)	3 (0.060)	3/236	NT	7.3%	intergenic (+222/‑677)	PP_5674/PP_4411	hypothetical protein/hypothetical protein
	?	NC_002947	5007917 =	37 (0.800)					intergenic (+251/‑648)	PP_5674/PP_4411	hypothetical protein/hypothetical protein

GCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC  >  NC_002947/5007769‑5008065                                                                                                                                                     |                                                                                                                                                     gCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCg                                                                                                                                                     >  2:111200/1‑150 (MQ=255)   aCCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                                                   <  2:129419/150‑1 (MQ=255)   aCCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                                                   >  1:841150/1‑150 (MQ=255)     cTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCtt                                                                                                                                                 >  1:603551/1‑150 (MQ=255)       gcggaccgggtaatgacgcttgtcccggtgacttcgcattcagccggcactcacttggtccgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                                               >  1:879103‑M1/114‑150 (MQ=255)       ccATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                                               >  2:1016547/1‑150 (MQ=255)                 gctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                                                   >  1:110932/1‑136 (MQ=255)                 gctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                                                   <  2:110932/136‑1 (MQ=255)                  ctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGt                                                                                                                                    <  1:111200/150‑1 (MQ=255)                              gCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATg                                                                                                                        >  2:838145/1‑150 (MQ=255)                                     ttGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                                                 <  1:779378/150‑1 (MQ=255)                                          cGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGatat                                                                                                            <  1:1016605/150‑1 (MQ=255)                                              aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCt                                                                                                          <  2:630658/148‑1 (MQ=255)                                              aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCt                                                                                                          >  1:630658/1‑148 (MQ=255)                                                  gCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                                               >  2:124286/1‑107 (MQ=255)                                                  gCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                                               <  1:124286/107‑1 (MQ=255)                                                   ctctGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTcgc                                                                                                   >  1:830765/1‑150 (MQ=255)                                                        tgAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTAcc                                                                                              >  1:1220105/1‑150 (MQ=255)                                                            cttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTc                                                                                                                                                      <  2:240679‑M1/30‑1 (MQ=255)                                                            cttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTc                                                                                                                                                      >  1:240679‑M1/61‑90 (MQ=255)                                                              ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                                                        >  1:586875/1‑150 (MQ=255)                                                              ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                                                        >  1:635825/1‑150 (MQ=255)                                                              ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                                                        <  1:650027/150‑1 (MQ=255)                                                              ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                                                        <  2:586875/150‑1 (MQ=255)                                                              ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                                                        <  1:894520/150‑1 (MQ=255)                                                                     gCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCgg                                                                                 <  1:425106/150‑1 (MQ=255)                                                                     gCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCgg                                                                                 >  2:425106/1‑150 (MQ=255)                                                                       ttAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCt                                                                               >  1:608279/1‑150 (MQ=255)                                                                       ttAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCt                                                                               >  1:595054/1‑150 (MQ=255)                                                                             tCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGc                                                                         <  2:608279/150‑1 (MQ=255)                                                                                       aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCg                                                               >  2:1154343/1‑150 (MQ=255)                                                                                           gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGa                                                                                                               >  2:1119662/1‑98 (MQ=255)                                                                                           gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGa                                                                                                               <  1:1119662/98‑1 (MQ=255)                                                                                           gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGAc                                                           >  1:963707/1‑150 (MQ=255)                                                                                           gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGAc                                                           >  1:183600/1‑150 (MQ=255)                                                                                                    tttCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCAt                                                  <  2:603551/150‑1 (MQ=255)                                                                                                        ttcCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTAcc                                              <  1:1016547/150‑1 (MQ=255)                                                                                                                gcaagccgaggcgccacacgcctaacggaaggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGGACCAAGTGAGTGCCGGCTGAATGCGAAGTCACCGGGACAAGCGTCATTACCCGGTCCGc                                      >  1:879103‑M2/38‑150 (MQ=255)                                                                                                                gTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAgt                                      >  1:92698/1‑149 (MQ=255)                                                                                                                   aaGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATc                                   >  2:1259960/1‑150 (MQ=255)                                                                                                                       tAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGt                               <  1:838145/150‑1 (MQ=255)                                                                                                                       gaggcgccacacgcctaacggaaggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAag                                                                                           <  2:240679‑M2/60‑1 (MQ=255)                                                                                                                       gaggcgccacacgcctaacggaaggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAag                                                                                           >  1:240679‑M2/31‑90 (MQ=255)                                                                                                                                   gTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTc                                         >  1:72016/1‑128 (MQ=255)                                                                                                                                   gTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTc                                         >  1:71949/1‑128 (MQ=255)                                                                                                                                   gTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTc                                         <  2:71949/128‑1 (MQ=255)                                                                                                                                   gTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTc                                         <  2:72016/128‑1 (MQ=255)                                                                                                                                     tAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTg                 <  2:1220105/150‑1 (MQ=255)                                                                                                                                          gtgtGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGa                                                                             <  2:1245438/85‑1 (MQ=255)                                                                                                                                          gtgtGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGa                                                                             >  1:1245438/1‑85 (MQ=255)                                                                                                                                              ggcgcctCGGCTTGCGCATAGGAAGTGGGCCCGCCATGGCTGCGGCATATCTATGTCGCGTACCAAGGGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGCCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGc        <  2:92698‑M2/143‑1 (MQ=255)                                                                                                                                                cgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTa      <  2:183600‑M2/145‑1 (MQ=255)                                                                                                                                                   ctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGAt   <  2:963707‑M2/148‑1 (MQ=255)                                                                                                                                                    tCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATc  >  1:1091622‑M2/2‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC  >  NC_002947/5007769‑5008065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.