New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5007888 =	41 (0.840)	3 (0.060)	3/236	NT	7.3%	intergenic (+222/‑677)	PP_5674/PP_4411	hypothetical protein/hypothetical protein
	?	NC_002947	5007917 =	37 (0.800)					intergenic (+251/‑648)	PP_5674/PP_4411	hypothetical protein/hypothetical protein

TTGAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGT  >  NC_002947/5007739‑5008036                                                                                                                                                      |                                                                                                                                                     gatctagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccga                                                                                                                                                      >  1:1091622‑M1/150‑150 (MQ=255)  atctagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAg                                                                                                                                                     <  2:963707‑M1/2‑1 (MQ=255)     tagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGgcg                                                                                                                                                  <  2:183600‑M1/5‑1 (MQ=255)       gccacctaccaaggtggccagatacccgatgctggccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcccttggtacgcgacatagatatgccgcagccatggcgggcccacttcctatgcgcaagccgAGGCGcc                                                                                                                                                <  2:92698‑M1/7‑1 (MQ=255)                      atCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCgtgt                                                                                                                                 <  2:362048/150‑1 (MQ=255)                       tctcTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATAAGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGtgtg                                                                                                                                <  1:930148/150‑1 (MQ=255)                         tctAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGgc                                                                                                                              >  2:650027/1‑150 (MQ=255)                           tAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGgcgc                                                                                                                            >  2:894520/1‑150 (MQ=255)                               gCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCg                                                                                                                        >  2:111200/1‑150 (MQ=255)                                 aCCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                      <  2:129419/150‑1 (MQ=255)                                 aCCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                      >  1:841150/1‑150 (MQ=255)                                   cTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCtt                                                                                                                    >  1:603551/1‑150 (MQ=255)                                     gcggaccgggtaatgacgcttgtcccggtgacttcgcattcagccggcactcacttggtccgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                  >  1:879103‑M1/114‑150 (MQ=255)                                     ccATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                  >  2:1016547/1‑150 (MQ=255)                                               gctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                      <  2:110932/136‑1 (MQ=255)                                               gctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGc                                                                                                                      >  1:110932/1‑136 (MQ=255)                                                ctgctTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGt                                                                                                       <  1:111200/150‑1 (MQ=255)                                                            gCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATg                                                                                           >  2:838145/1‑150 (MQ=255)                                                                   ttGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                    <  1:779378/150‑1 (MQ=255)                                                                      cccGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAg                                                                                                                                                     <  2:925350/82‑1 (MQ=255)                                                                      cccGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAg                                                                                                                                                     >  1:925350/1‑82 (MQ=255)                                                                        cGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGatat                                                                               <  1:1016605/150‑1 (MQ=255)                                                                            aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCt                                                                             <  2:630658/148‑1 (MQ=255)                                                                            aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCt                                                                             >  1:630658/1‑148 (MQ=255)                                                                                gCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                  <  1:124286/107‑1 (MQ=255)                                                                                gCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                  >  2:124286/1‑107 (MQ=255)                                                                                 ctctGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTcgc                                                                      >  1:830765/1‑150 (MQ=255)                                                                                      tgAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTAcc                                                                 >  1:1220105/1‑150 (MQ=255)                                                                                          cttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTc                                                                                                                         >  1:240679‑M1/61‑90 (MQ=255)                                                                                          cttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTc                                                                                                                         <  2:240679‑M1/30‑1 (MQ=255)                                                                                          ccTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGgc                                                                                                                              >  1:109158/1‑85 (MQ=255)                                                                                          ccTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGgc                                                                                                                              <  2:109158/85‑1 (MQ=255)                                                                                            ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                           >  1:586875/1‑150 (MQ=255)                                                                                            ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                           <  2:586875/150‑1 (MQ=255)                                                                                            ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                           <  1:894520/150‑1 (MQ=255)                                                                                            ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                           >  1:635825/1‑150 (MQ=255)                                                                                            ttAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                           <  1:650027/150‑1 (MQ=255)                                                                                                   gCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCgg                                                    <  1:425106/150‑1 (MQ=255)                                                                                                   gCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCgg                                                    >  2:425106/1‑150 (MQ=255)                                                                                                     ttAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCt                                                  >  1:595054/1‑150 (MQ=255)                                                                                                     ttAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCt                                                  >  1:608279/1‑150 (MQ=255)                                                                                                           tCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGc                                            <  2:608279/150‑1 (MQ=255)                                                                                                                     aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCg                                  >  2:1154343/1‑150 (MQ=255)                                                                                                                         gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGa                                                                                  >  2:1119662/1‑98 (MQ=255)                                                                                                                         gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGa                                                                                  <  1:1119662/98‑1 (MQ=255)                                                                                                                         gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGAc                              >  1:963707/1‑150 (MQ=255)                                                                                                                         gCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGAc                              >  1:183600/1‑150 (MQ=255)                                                                                                                                  tttCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCAt                     <  2:603551/150‑1 (MQ=255)                                                                                                                                      ttcCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTAcc                 <  1:1016547/150‑1 (MQ=255)                                                                                                                                              gTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAgt         >  1:92698/1‑149 (MQ=255)                                                                                                                                                 aaGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATc      >  2:1259960/1‑150 (MQ=255)                                                                                                                                                     tAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGt  <  1:838145/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTGAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGT  >  NC_002947/5007739‑5008036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.