New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477496	44 (0.900)	4 (0.080)	4/240	NT	8.9%	coding (345/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477510	40 (0.850)					coding (331/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein

TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5477344‑5477496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC  <  NC_002947/5477510‑5477363                                                                                                                                                                                                                                                                                                                TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGACAGAGCCCGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG                                                                                                                                                          <  2:466617/150‑1                   AGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG                                                                                                                                                          >  1:575678/1‑132                   AGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG                                                                                                                                                          <  2:575678/132‑1                                                                                                                              GTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAG‑GCCGACAG                                                                                                                                     <  1:1222531/45‑1                                                                                                                              GTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAG‑GCCGACAG                                                                                                                                     >  2:1222531/1‑45                                                                                                                                    ATCGGCCTCCAGCAACGGGCTGTCGG‑CCTGCTCCGGCAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTG                                       >  1:562199/1‑133                                                                                                                                    ATCGGCCTCCAGCAACGGGCTGTCGG‑CCTGCTCCGGCAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTG                                       <  2:562199/133‑1                                                                                                                                                       CTGCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTAC   <  1:735845/150‑1                                                                                                                                                        TGCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC  >  2:547652/1‑150                                                                                                                                                                                                                                                                                                                TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5477344‑5477496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC  <  NC_002947/5477510‑5477363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.