New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477496	44 (0.900)	4 (0.080)	4/240	NT	8.9%	coding (345/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477510	40 (0.850)					coding (331/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein

CAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCACCGCTTCACAGCCGATCGAGG  >  NC_002947/5477361‑5477659                                                                                                                                                       |                                                                                                                                                      cAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCgg                                                                                                                                                       >  2:1151632/1‑150 (MQ=255)   ggTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGca                                                                                                                                                     >  2:547652‑M2/1‑148 (MQ=255)    gTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGcag                                                                                                                                                    <  1:735845‑M2/150‑4 (MQ=255)         ccAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCAtt                                                                                                                                               >  1:1230049/1‑150 (MQ=255)               gATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCgg                                                                                                                                                       >  1:77217/1‑136 (MQ=255)               gATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCgg                                                                                                                                                       <  2:77217/136‑1 (MQ=255)               gATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCt                                                                                                                                         >  2:176098/1‑150 (MQ=255)                     ccAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTACGGCAGCCATTGCACCTGGCcca                                                                                                                                   <  1:693073/150‑1 (MQ=255)                       aGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCccacc                                                                                                                                 >  2:793203/1‑150 (MQ=255)                       aGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCccacc                                                                                                                                 >  1:918408/1‑150 (MQ=255)                             tGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAAc                                                                                                                           <  1:1081118/150‑1 (MQ=255)                                 gCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGt                                                                                                                       <  1:1151632/150‑1 (MQ=255)                                  cccGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTc                                                                                                                      <  2:126810/150‑1 (MQ=255)                                   ccGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTcc                                                                                                                     <  2:763053/150‑1 (MQ=255)                                   ccGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTcc                                                                                                                     >  1:179077/1‑150 (MQ=255)                                        cACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTg                                                                                                                <  1:176098/150‑1 (MQ=255)                                        cACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAGG‑CCGAcagcccgttgctggaggccgat                                                                                                                                 <  2:562199‑M2/133‑23 (MQ=255)                                        cACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAGG‑CCGAcagcccgttgctggaggccgat                                                                                                                                 >  1:562199‑M2/1‑111 (MQ=255)                                          ccGGCAGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCa                                                                                                              <  2:527123/150‑1 (MQ=255)                                               cgcgGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCg                                                                                                         <  2:26700/150‑1 (MQ=255)                                                 cgGCATTCCCAGGGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGa                                                                                                       <  2:556478/150‑1 (MQ=255)                                                 cgGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGTAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGa                                                                                                       <  1:872947/150‑1 (MQ=255)                                                   gCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGc                                                                                                     >  2:52388/1‑150 (MQ=255)                                                           aGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCATCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGa                                                                                             <  2:1003176/150‑1 (MQ=255)                                                             cgcTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGAtt                                                                                           <  1:52388/150‑1 (MQ=255)                                                                      cATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGcgccg                                                                                  <  2:1234668/150‑1 (MQ=255)                                                                         ggggTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTCCTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCAc                                                                               >  2:611798/1‑150 (MQ=255)                                                                             ggCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGccc                                                                           <  1:1113732/149‑1 (MQ=255)                                                                                     cAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGAcgcg                                                                   <  2:200040/150‑1 (MQ=255)                                                                                     cAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGAcgcg                                                                   >  1:1087969/1‑150 (MQ=255)                                                                                      aGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCgg                                                                  >  2:751413/1‑150 (MQ=255)                                                                                             ccaGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCa                                                           >  1:704130/1‑150 (MQ=255)                                                                                                gcagcGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCCCCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAg                                                                                       <  1:886913/119‑1 (MQ=255)                                                                                                gcagcGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAg                                                                                       >  2:886913/1‑119 (MQ=255)                                                                                                gcagcGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCa                                                        <  2:918408/150‑1 (MQ=255)                                                                                                       cAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGtt                                                 <  2:549180/150‑1 (MQ=255)                                                                                                               cgtcATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCctgct                                         >  1:355767/1‑150 (MQ=255)                                                                                                                   aTCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCAc                                     >  2:883630/1‑150 (MQ=255)                                                                                                                           ccAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTcgc                             <  2:1230049/150‑1 (MQ=255)                                                                                                                           ccAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTcgc                             <  1:751413/150‑1 (MQ=255)                                                                                                                            cAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATcc                                             <  1:777978/133‑1 (MQ=255)                                                                                                                            cAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATcc                                             >  2:777978/1‑133 (MQ=255)                                                                                                                            cAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTcgcg                            >  2:589699/1‑150 (MQ=255)                                                                                                                                      cTGTCGGC‑CTGCTCCGGcagcccgttgctggaggccgatgacgac                                                                                                                           <  1:1222531‑M2/45‑29 (MQ=255)                                                                                                                                      cTGTCGGC‑CTGCTCCGGcagcccgttgctggaggccgatgacgac                                                                                                                           >  2:1222531‑M2/1‑17 (MQ=255)                                                                                                                                       tGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGcgccgc                                                                                 <  1:770440/86‑1 (MQ=255)                                                                                                                                       tGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGcgccgc                                                                                 >  2:770440/1‑86 (MQ=255)                                                                                                                                            gC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCAc                      >  1:624596/1‑140 (MQ=255)                                                                                                                                            gC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCAc                      <  2:624596/140‑1 (MQ=255)                                                                                                                                               cTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCACCGCTTCACAGcc          >  2:434120/1‑150 (MQ=255)                                                                                                                                                       gCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCACCGCTTCACAGCCGATCGAgg  >  1:478948/1‑150 (MQ=255)                                                                                                                                                       gCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCACCGCTTCACAGCCGATCGAgg  >  2:552594/1‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                      CAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTGTCGGC‑CTGCTCCGGCAGCCATTGCACCTGGCCCACCAGCAACTGGTCCTTCTGCACCTCGGAGCTTTCCAGATTGAAGCGCCGCACGCCCTCGACGCGGATACCCAGCAAGCCGTTATCCTGCTGCACGAAGTCGCGGATCACCGCTTCACAGCCGATCGAGG  >  NC_002947/5477361‑5477659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.