New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5899429 =	48 (0.980)	5 (0.110)	4/236	NT	10.8%	coding (1515/3054 nt)	PP_5173	RND family transporter
	?	NC_002947	5899449 =	37 (0.800)					coding (1495/3054 nt)	PP_5173	RND family transporter

CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5899584‑5899429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG  >  NC_002947/5899449‑5899592                                                                                                                                                                                                                                                                                                               CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑T                                                                                                                                                        <  1:231001/150‑1   CAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGA                                                                                                                                                      <  1:855420/150‑1                                   CCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCAC                                                                                                                      <  2:706653/150‑1                                                                        GTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGA                                                                                                                                >  1:951226/1‑103                                                                        GTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGA                                                                                                                                <  2:951226/103‑1                                                                                                                                    tCTCAAGGCTCACGAGGC‑CCAGCCTTGAGCTTGTCGCCTTGGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCTGAt                     <  1:685795/149‑2                                                                                                                                      TCAAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACGGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACa                   >  2:685795/1‑149                                                                                                                                                       TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGGATTCACCCGGAGACCTGGCGTTGAGGCCGATA   >  2:612609/1‑150                                                                                                                                                        GAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG  <  1:413788/150‑1                                                                                                                                                                                                                                                                                                               CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5899584‑5899429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG  >  NC_002947/5899449‑5899592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.