New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5899429 =	48 (0.980)	5 (0.110)	4/236	NT	10.8%	coding (1515/3054 nt)	PP_5173	RND family transporter
	?	NC_002947	5899449 =	37 (0.800)					coding (1495/3054 nt)	PP_5173	RND family transporter

ACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG  >  NC_002947/5899302‑5899592                                                                                                                                                     |                                                                                                                                                tgttctgcgggtgaatacaccttcaccctgttcgccgtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaAGGCTCA‑GCCTCGTGAGCCTTGa                                                                                                                                               >  2:685795‑M1/128‑150 (MQ=255)   tGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGc                                                                                                                                             <  1:189151/150‑1 (MQ=255)   atcagcgggtgaatacaccttcaccctgttcgcggtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctccaaggcgacaagctcaAGGCTGG‑GCCTCGTGAGCCTTGaga                                                                                                                                             <  1:685795‑M1/25‑2 (MQ=255)       tCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGGCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGt                                                                                                                                         >  1:596918/1‑150 (MQ=255)            acaAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCt                                                                                                                                    >  1:722684/1‑150 (MQ=255)            acaAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCt                                                                                                                                    >  2:1171165/1‑150 (MQ=255)             caAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCtt                                                                                                                                   <  2:773735/150‑1 (MQ=255)              aaaaCGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGAAGATGGCCAACCAGCGGTAGCGCATGCACCACAGCAACCCGCCTTCAAGTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCttt                                                                                                                                  >  2:186609/1‑150 (MQ=255)                    cATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAat                                                                                                                            <  2:1023036/150‑1 (MQ=255)                    cATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAat                                                                                                                            <  2:1022689/150‑1 (MQ=255)                      tGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCATCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                                          <  2:1201934/150‑1 (MQ=255)                           ccctgttcgcggtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaaggctcagcctcgtgagcctTGAGCTTGTCGCCTTTGAGAATATGCAc                                                                                                                      <  2:706653‑M2/28‑1 (MQ=255)                                        cGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                                          >  2:376760/1‑132 (MQ=255)                                        cGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                                          <  1:376760/132‑1 (MQ=255)                                               caccacGGTGCCAATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCgaagaa                                                                                                 <  1:142371/150‑1 (MQ=255)                                                 ccacGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAaca                                                                                               <  1:1278769/150‑1 (MQ=255)                                                      gTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGcc                                                                                          >  2:1187107/1‑150 (MQ=255)                                                               atgGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                                                 <  1:1171165/150‑1 (MQ=255)                                                                gtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaaggctcagcctcgtgagcctTGAGCTTGTCGCCTTTga                                                                                                                                <  2:951226‑M2/18‑1 (MQ=255)                                                                gtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaaggctcagcctcgtgagcctTGAGCTTGTCGCCTTTga                                                                                                                                >  1:951226‑M2/86‑103 (MQ=255)                                                                  gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAata                                                                                                                           >  1:199596/1‑105 (MQ=255)                                                                  gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAata                                                                                                                           <  2:199596/105‑1 (MQ=255)                                                                  gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCcacgac                                                                              >  1:728087/1‑150 (MQ=255)                                                                   tCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCcacgaca                                                                             >  2:1218943/1‑150 (MQ=255)                                                                           cGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgg                                                                     <  2:227470/150‑1 (MQ=255)                                                                                  gcATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACgg                                                              <  2:855008/150‑1 (MQ=255)                                                                                     tGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCaa                                                           <  2:728087/150‑1 (MQ=255)                                                                                      gCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCa                                                                       <  1:510535/137‑1 (MQ=255)                                                                                      gCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCa                                                                       >  2:510535/1‑137 (MQ=255)                                                                                        accacAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCa                                                        >  1:341742/1‑150 (MQ=255)                                                                                            caGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACcgc                                                    <  2:722684/150‑1 (MQ=255)                                                                                                   ccGCCTTCACATGCCCGCACGACCCGCCCATGCTCA‑GCCGCGTGAGCCTTGAGCTTGTCGCCTTTGACAACATGCATCCCACCCACCGGCGCGCATTACCCAGCCACCACCCCCGACACGATCATGGCCACGGCAATCACCGCGAACacg                                             <  2:596918/150‑3 (MQ=255)                                                                                                   ccGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgg                                                                     >  2:369768/1‑126 (MQ=255)                                                                                                   ccGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgc                                                                     <  1:369768/126‑2 (MQ=255)                                                                                                    gtgcatattctcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                                            <  2:706653‑M1/122‑1 (MQ=255)                                                                                                    cGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                                            >  2:1074631/1‑150 (MQ=255)                                                                                                    cGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                                            >  2:84084/1‑150 (MQ=255)                                                                                                            aaTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGgtg                                    >  2:794390/1‑150 (MQ=255)                                                                                                            aaTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGAAACGGACAAAGCCACGGCAATCACCGCGAACAGGGTGAAGgtg                                    >  2:426601/1‑150 (MQ=255)                                                                                                             aTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCCGTGCCACGGCAATCACCGCGAACAGGGTGAAGgtgt                                   <  1:426601/150‑1 (MQ=255)                                                                                                              tcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                                                 <  2:951226‑M1/85‑1 (MQ=255)                                                                                                              tcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                                                 >  1:951226‑M1/19‑103 (MQ=255)                                                                                                                cccgcccgACCCGTCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTAtt                                >  1:328171/1‑150 (MQ=255)                                                                                                                 ccgcccgACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTc                               >  2:413788/1‑150 (MQ=255)                                                                                                                          ccGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCACTCACCGCGCACAGGGTGAAGGTGTATTCACCCGCAgc                      >  2:176033/1‑149 (MQ=255)                                                                                                                            tctcaaggctcacgaggcccagcctTGAGCTTGTCGCCTTGGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCTgat                     <  1:685795‑M2/125‑2 (MQ=255)                                                                                                                            ggCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCTCGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAAc                    >  2:1137667/1‑150 (MQ=255)                                                                                                                              tcaaggctcacgaggctgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACGGCGAACAGGGTGAAGGTGTATTCACCCGCAGAaca                   >  2:685795‑M2/24‑149 (MQ=255)                                                                                                                                    TCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTg            <  1:855420‑M1/150‑1 (MQ=255)                                                                                                                                      A‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAg          <  1:231001‑M1/150‑1 (MQ=255)                                                                                                                                         ccTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGAGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGc        <  1:1187107/150‑1 (MQ=255)                                                                                                                                           tCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCg      >  2:868690/1‑150 (MQ=255)                                                                                                                                              tgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGGATTCACCCGGAGACCTGGCGTTGAGGCCGATa   >  2:612609‑M2/8‑150 (MQ=255)                                                                                                                                               gagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAg  <  1:413788‑M2/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                ACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG  >  NC_002947/5899302‑5899592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.