New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5899429 =	48 (0.980)	5 (0.110)	4/236	NT	10.8%	coding (1515/3054 nt)	PP_5173	RND family transporter
	?	NC_002947	5899449 =	37 (0.800)					coding (1495/3054 nt)	PP_5173	RND family transporter

GCGGTCCGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAAC  >  NC_002947/5899282‑5899574                                                                                                                                                    |                                                                                                                                                   gCGGTCCGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAgg                                                                                                                                                  >  1:901354/1‑150 (MQ=255)    ctatcggcctcaacgccagttctgcgggtgaatacaccttcaccctgttcgcggtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaAGGCTc                                                                                                                                               <  1:413788‑M1/6‑1 (MQ=255)     tatcggcctcaacgccaggtctccgggtgaatccaccttcaccctgttcgcggtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaAGGCTCa                                                                                                                                              >  2:612609‑M1/144‑150 (MQ=255)       cGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑Gc                                                                                                                                           >  1:1023036/1‑150 (MQ=255)       cGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑Gc                                                                                                                                           >  1:1022689/1‑150 (MQ=255)       cGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑Gc                                                                                                                                           <  2:492145/150‑1 (MQ=255)            aCGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGt                                                                                                                                      <  2:980858/150‑1 (MQ=255)             cGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTg                                                                                                                                     >  1:227470/1‑150 (MQ=255)                gaagaaCTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGa                                                                                                                                    >  2:562813/1‑148 (MQ=255)                gaagaaCTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGa                                                                                                                                    <  1:562813/148‑1 (MQ=255)                gaagaaCTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGc                                                                                                                                  <  2:976096/150‑1 (MQ=255)                  agaaCTTGGTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCt                                                                                                                                <  2:1103357/150‑1 (MQ=255)                     tgttctgcgggtgaatacaccttcaccctgttcgccgtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctcaaaggcgacaagctcaAGGCTCA‑GCCTCGTGAGCCTTGa                                                                                                                             >  2:685795‑M1/128‑150 (MQ=255)                       tGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGc                                                                                                                           <  1:189151/150‑1 (MQ=255)                       atcagcgggtgaatacaccttcaccctgttcgcggtgattgccgtggccctgatcgtgtcgtgggtggtggctgtgttcttcgcgccggtgcttggcgtgcatattctccaaggcgacaagctcaAGGCTGG‑GCCTCGTGAGCCTTGaga                                                                                                                           <  1:685795‑M1/25‑2 (MQ=255)                           tCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGGCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGt                                                                                                                       >  1:596918/1‑150 (MQ=255)                                acaAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCt                                                                                                                  >  2:1171165/1‑150 (MQ=255)                                acaAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCt                                                                                                                  >  1:722684/1‑150 (MQ=255)                                 caAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCtt                                                                                                                 <  2:773735/150‑1 (MQ=255)                                  aaaaCGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGAAGATGGCCAACCAGCGGTAGCGCATGCACCACAGCAACCCGCCTTCAAGTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCttt                                                                                                                >  2:186609/1‑150 (MQ=255)                                        cATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAat                                                                                                          <  2:1023036/150‑1 (MQ=255)                                        cATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAat                                                                                                          <  2:1022689/150‑1 (MQ=255)                                          tGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCATCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                        <  2:1201934/150‑1 (MQ=255)                                                            cGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                        <  1:376760/132‑1 (MQ=255)                                                            cGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAatat                                                                                                        >  2:376760/1‑132 (MQ=255)                                                                   caccacGGTGCCAATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCgaagaa                                                                               <  1:142371/150‑1 (MQ=255)                                                                     ccacGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAaca                                                                             <  1:1278769/150‑1 (MQ=255)                                                                          gTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGcc                                                                        >  2:1187107/1‑150 (MQ=255)                                                                                   atgGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                               <  1:1171165/150‑1 (MQ=255)                                                                                      gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAata                                                                                                         >  1:199596/1‑105 (MQ=255)                                                                                      gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAata                                                                                                         <  2:199596/105‑1 (MQ=255)                                                                                      gTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCcacgac                                                            >  1:728087/1‑150 (MQ=255)                                                                                       tCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCcacgaca                                                           >  2:1218943/1‑150 (MQ=255)                                                                                         aaCCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTc                                                                                                                                        >  1:549305/1‑71 (MQ=255)                                                                                         aaCCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTc                                                                                                                                        <  2:549305/71‑1 (MQ=255)                                                                                               cGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgg                                                   <  2:227470/150‑1 (MQ=255)                                                                                                      gcATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACgg                                            <  2:855008/150‑1 (MQ=255)                                                                                                         tGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCaa                                         <  2:728087/150‑1 (MQ=255)                                                                                                          gCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCa                                                     >  2:510535/1‑137 (MQ=255)                                                                                                          gCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCa                                                     <  1:510535/137‑1 (MQ=255)                                                                                                            accacAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCa                                      >  1:341742/1‑150 (MQ=255)                                                                                                                caGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACcgc                                  <  2:722684/150‑1 (MQ=255)                                                                                                                       ccGCCTTCACATGCCCGCACGACCCGCCCATGCTCA‑GCCGCGTGAGCCTTGAGCTTGTCGCCTTTGACAACATGCATCCCACCCACCGGCGCGCATTACCCAGCCACCACCCCCGACACGATCATGGCCACGGCAATCACCGCGAACacg                           <  2:596918/150‑3 (MQ=255)                                                                                                                       ccGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgg                                                   >  2:369768/1‑126 (MQ=255)                                                                                                                       ccGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAgc                                                   <  1:369768/126‑2 (MQ=255)                                                                                                                        gtgcatattctcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                          <  2:706653‑M1/122‑1 (MQ=255)                                                                                                                        cGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                          >  2:84084/1‑150 (MQ=255)                                                                                                                        cGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAggg                          >  2:1074631/1‑150 (MQ=255)                                                                                                                                aaTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGgtg                  >  2:794390/1‑150 (MQ=255)                                                                                                                                aaTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGAAACGGACAAAGCCACGGCAATCACCGCGAACAGGGTGAAGgtg                  >  2:426601/1‑150 (MQ=255)                                                                                                                                 aTGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCCGTGCCACGGCAATCACCGCGAACAGGGTGAAGgtgt                 <  1:426601/150‑1 (MQ=255)                                                                                                                                  tcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                               >  1:951226‑M1/19‑103 (MQ=255)                                                                                                                                  tcaaaggcgacaagctcaAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCAccacccac                                                               <  2:951226‑M1/85‑1 (MQ=255)                                                                                                                                    cccgcccgACCCGTCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTAtt              >  1:328171/1‑150 (MQ=255)                                                                                                                                     ccgcccgACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTc             >  2:413788/1‑150 (MQ=255)                                                                                                                                              ccGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCACTCACCGCGCACAGGGTGAAGGTGTATTCACCCGCAgc    >  2:176033/1‑149 (MQ=255)                                                                                                                                                ggCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCTCGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAAc  >  2:1137667/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCGGTCCGAGGACGGGAAGAACTGGTTCTGCACAAAACGCATGCAGAAGATCGCCAGGGCGAACAGCACCACGGTGCCGATGATGGTCAACCAGCGGTTGCGCATGCACCACAGCAACCCGCCTTCAAATGCCCGCCCGACCCGGCCAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAAC  >  NC_002947/5899282‑5899574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.