New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5971629	32 (0.650)	3 (0.060)	3/240	NT	8.9%	coding (153/222 nt)	PP_5237	hypothetical protein
	?	NC_002947	= 5971643	31 (0.660)					coding (167/222 nt)	PP_5237	hypothetical protein

CTTGTTGCGCCGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5971476‑5971629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccga‑cAGGCCGTTGGCCAGGTCGGTTTCGACGCTGACCGCCGGTGCCTGCACGCCTACCTGGGCGCGGCTGTGGACGAGGGCTAGAGACATGAACACTCCGTTGTTGCTGGAAAATGCCGCTTCCTGCGGCTGGGCA  <  NC_002947/5971643‑5971512                                                                                                                                                                                                                                                                                                 CTTGTTGCGCCGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAAC                                                                                                                                           <  2:183832/150‑1  TTGTTGCGCCGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACC                                                                                                                                          <  2:955932/150‑1               GTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAAC                                                                                                                                           >  1:686713/1‑136               GTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAAC                                                                                                                                           <  2:686713/136‑1                                                                                   ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CAGGCCGTTGGCCAGGTCGGTTTCG                                                                                                              >  1:678294/1‑96                                                                                   ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CAGGCCGTTGGCCAGGTCGGTTTCG                                                                                                              <  2:678294/96‑1                                                                                                                                         GTCAGCGTCGAAACCGACCTGGCCAACGGCC‑TGTCGGTTTCGACGCTGACCGCCGGTGCCTGCACGCCTACCTGGGCGCGGCTGTGGACGAGGGCTAGAGACATGAACACTCCGTTGCTGCTCGAAAATGCCGCTTCCTGAGGCTGGGCA  >  2:323789/1‑150                                                                                                                                                                                                                                                                                                 CTTGTTGCGCCGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5971476‑5971629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccga‑cAGGCCGTTGGCCAGGTCGGTTTCGACGCTGACCGCCGGTGCCTGCACGCCTACCTGGGCGCGGCTGTGGACGAGGGCTAGAGACATGAACACTCCGTTGTTGCTGGAAAATGCCGCTTCCTGCGGCTGGGCA  <  NC_002947/5971643‑5971512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.