New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5971629	32 (0.650)	3 (0.060)	3/240	NT	8.9%	coding (153/222 nt)	PP_5237	hypothetical protein
	?	NC_002947	= 5971643	31 (0.660)					coding (167/222 nt)	PP_5237	hypothetical protein

CGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTT  >  NC_002947/5971486‑5971768                                                                                                                                                 |                                                                                                                                            cGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTg                                                                                                                                          >  2:989924/1‑147 (MQ=38) cGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTg                                                                                                                                          <  1:989924/147‑1 (MQ=38)       tGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGc                                                                                                                                 <  1:273524/150‑1 (MQ=39)       tGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGc                                                                                                                                 <  1:561312/150‑1 (MQ=39)         gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGc                                                                                                                                        >  2:374737/1‑141 (MQ=39)         gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGc                                                                                                                                        <  1:374737/141‑1 (MQ=39)         gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCt                                                                                                                               >  2:704225/1‑150 (MQ=39)         gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCt                                                                                                                               >  2:424468/1‑150 (MQ=39)                 ggCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGa                                                                                                                       <  1:704225/150‑1 (MQ=255)                  ggtATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGaa                                                                                                                      >  1:383864/3‑150 (MQ=255)                         tttGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTgcgc                                                                                                               <  1:424468/150‑1 (MQ=255)                         tttGACCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTGAATGTATCTAGCCCTCGTACACAGTCGCGCCCAGGTAGGCGTGCAGGGACCGCGGCTCAGCGGCGAAACCGA‑CCTGGCCAACGGCCTTTCGGGGACGTTgcgc                                                                                                               >  1:458382/1‑150 (MQ=14)                           tGCCCAGCCTCAGGAAGCGGCATTTTCGAGCAGCAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CA‑GGCCGTTGGCCAggtcggtttcgacgctgac                                                                                                            >  2:323789‑M2/1‑131 (MQ=255)                              ccAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGc                                                                                                                                 >  1:961199/1‑127 (MQ=40)                              ccAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGc                                                                                                                                 <  2:961199/127‑1 (MQ=40)                                 gCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCACTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCACCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCa                                                                                                       <  1:1056431/150‑1 (MQ=255)                                                         caacaaCGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTc                                                                               >  1:1152321/1‑150 (MQ=255)                                                             aacGGAGTGTTCATGTCTCTAGCCCGCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                           <  2:458382/150‑1 (MQ=255)                                                                         aTGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑Caggccgttggccaggtcggtttcg                                                                                                                     >  1:678294‑M1/1‑72 (MQ=255)                                                                         aTGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑Caggccgttggccaggtcggtttcg                                                                                                                     <  2:678294‑M1/96‑25 (MQ=255)                                                                              tctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAAt                                                              >  1:1002944/1‑146 (MQ=255)                                                                              tctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAAt                                                              <  2:1002944/146‑1 (MQ=255)                                                                               ctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGa                                                         >  1:685020/1‑150 (MQ=255)                                                                                  gCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTa                                                      >  1:284757/1‑150 (MQ=255)                                                                                    ccTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGa                                                    <  2:284757/150‑1 (MQ=255)                                                                                        gTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACg                                                >  2:773121/1‑150 (MQ=255)                                                                                           cacaGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGA‑‑‑GCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGt                                          <  2:172387/150‑1 (MQ=255)                                                                                              aGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGt                                          <  1:406013/150‑1 (MQ=255)                                                                                                  gcgcCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                           >  2:186718/1‑113 (MQ=255)                                                                                                  gcgcCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                           <  1:186718/113‑1 (MQ=255)                                                                                                     cccAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACg                                   >  2:916698/1‑150 (MQ=255)                                                                                                                gTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATcc                        >  1:953124/1‑150 (MQ=255)                                                                                                                   cAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACAt                          <  1:304728/145‑1 (MQ=255)                                                                                                                   cAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGAGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACAt                          >  2:304728/1‑145 (MQ=255)                                                                                                                     ggCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATc                   <  1:916698/150‑1 (MQ=255)                                                                                                                        aCCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCCGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAg                >  1:561746/1‑150 (MQ=255)                                                                                                                              ggTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAAt          <  2:685020/150‑1 (MQ=255)                                                                                                                               gTCAGCGTCGAAACCGACCtggccaacggcctgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacatgaacactccgttgctgctcgaaaatgccgcttcctgaggctgggca          >  2:323789‑M1/1‑19 (MQ=255)                                                                                                                                     gTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAGAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCt   >  1:990917/1‑150 (MQ=255)                                                                                                                                      tCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCtt  <  1:788099/150‑1 (MQ=255)                                                                                                                                       cGAAACCGA‑CCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacat                                                       <  2:678294‑M2/96‑73 (MQ=255)                                                                                                                                       cGAAACCGA‑CCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacat                                                       >  1:678294‑M2/1‑24 (MQ=255)                                                                                                                                                 |                                                                                                                                            CGGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGA‑CCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTT  >  NC_002947/5971486‑5971768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.