New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5971629	32 (0.650)	3 (0.060)	3/240	NT	8.9%	coding (153/222 nt)	PP_5237	hypothetical protein
	?	NC_002947	= 5971643	31 (0.660)					coding (167/222 nt)	PP_5237	hypothetical protein

GCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTTAAAAATGGCA  >  NC_002947/5971494‑5971787                                                                                                                                                      |                                                                                                                                                 gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCt                                                                                                                                                  >  2:424468/1‑150 (MQ=39) gcagcaCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCt                                                                                                                                                  >  2:704225/1‑150 (MQ=39)         ggCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGa                                                                                                                                          <  1:704225/150‑1 (MQ=255)          ggtATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGaa                                                                                                                                         >  1:383864/3‑150 (MQ=255)                 tttGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTgcgc                                                                                                                                  <  1:424468/150‑1 (MQ=255)                 tttGACCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTGAATGTATCTAGCCCTCGTACACAGTCGCGCCCAGGTAGGCGTGCAGGGACCGCGGCTCAGCGGCGAAACCGACCTGGCCAACGGCCTTTCGGGGACGTTgcgc                                                                                                                                  >  1:458382/1‑150 (MQ=14)                   tGCCCAGCCTCAGGAAGCGGCATTTTCGAGCAGCAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACA‑GGCCGTTGGCCAggtcggtttcgacgctgac                                                                                                                               >  2:323789‑M2/1‑131 (MQ=255)                         gCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCACTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCACCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCa                                                                                                                          <  1:1056431/150‑1 (MQ=255)                                                 caacaaCGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTc                                                                                                  >  1:1152321/1‑150 (MQ=255)                                                     aacGGAGTGTTCATGTCTCTAGCCCGCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                                              <  2:458382/150‑1 (MQ=255)                                                                      tctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAAt                                                                                 >  1:1002944/1‑146 (MQ=255)                                                                      tctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAAt                                                                                 <  2:1002944/146‑1 (MQ=255)                                                                       ctAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGa                                                                            >  1:685020/1‑150 (MQ=255)                                                                          gCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTa                                                                         >  1:284757/1‑150 (MQ=255)                                                                            ccTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGa                                                                       <  2:284757/150‑1 (MQ=255)                                                                                gTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACg                                                                   >  2:773121/1‑150 (MQ=255)                                                                                   cacaGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGA‑‑‑GCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGt                                                             <  2:172387/150‑1 (MQ=255)                                                                                      aGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGt                                                             <  1:406013/150‑1 (MQ=255)                                                                                          gcgcCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                                              <  1:186718/113‑1 (MQ=255)                                                                                          gcgcCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGaaa                                                                                              >  2:186718/1‑113 (MQ=255)                                                                                             cccAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACg                                                      >  2:916698/1‑150 (MQ=255)                                                                                                        gTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATcc                                           >  1:953124/1‑150 (MQ=255)                                                                                                           cAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACAt                                             <  1:304728/145‑1 (MQ=255)                                                                                                           cAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGAGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACAt                                             >  2:304728/1‑145 (MQ=255)                                                                                                             ggCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATc                                      <  1:916698/150‑1 (MQ=255)                                                                                                                aCCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCCGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAg                                   >  1:561746/1‑150 (MQ=255)                                                                                                                      ggTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAAt                             <  2:685020/150‑1 (MQ=255)                                                                                                                             gTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAGAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCt                      >  1:990917/1‑150 (MQ=255)                                                                                                                              tCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCtt                     <  1:788099/150‑1 (MQ=255)                                                                                                                               cGAAACCGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacat                                                                          >  1:678294‑M2/1‑24 (MQ=255)                                                                                                                               cGAAACCGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacat                                                                          <  2:678294‑M2/96‑73 (MQ=255)                                                                                                                                              cAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCCGGTGTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTTAAAAATg     >  1:996537/1‑150 (MQ=255)                                                                                                                                               aaCGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATaccac                        >  2:336160/1‑130 (MQ=255)                                                                                                                                               aaCGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATaccac                        <  1:336160/130‑1 (MQ=255)                                                                                                                                               aaCGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTTAAAAATgg    <  2:1152321/150‑1 (MQ=255)                                                                                                                                                 cGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATaccac                        <  1:250103/128‑1 (MQ=255)                                                                                                                                                 cGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATaccac                        >  2:250103/1‑128 (MQ=255)                                                                                                                                                 cGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTTAAAAATGGCa  <  1:773121/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTTAAAAATGGCA  >  NC_002947/5971494‑5971787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.