New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2214501	34 (0.690)	4 (0.080)	4/242	NT	10.8%	coding (226/954 nt)	PP_1957	Pdr/VanB family oxidoreductase
	?	NC_002947	= 2214515	33 (0.700)					coding (240/954 nt)	PP_1957	Pdr/VanB family oxidoreductase

AATGGCGAAAAGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATG  >  NC_002947/2214357‑2214650                                                                                                                                                 |                                                                                                                                                      aaTGGCGAAAAGCTTCAAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCgcggc                                                                                                                                                  <  2:789928/150‑1 (MQ=255)     gCGAAAAGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCt                                                                                                                                              >  2:240785/1‑150 (MQ=255)           aGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACTTTCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAg                                                                                                                                        >  2:301889‑M2/1‑149 (MQ=255)             cTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAgcg                                                                                                                                      <  2:753456‑M2/150‑4 (MQ=255)                  aGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCa                                                                                                                                 >  1:313247/1‑150 (MQ=255)                   gCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCAc                                                                                                                                >  2:1201698/1‑150 (MQ=255)                                     cATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGc                                                                                                              <  2:260759/150‑1 (MQ=255)                                            aTGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGaaaa                                                                                                       >  1:260837/1‑150 (MQ=255)                                            aTGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCACTGCGGCTCCCGAGCTATTCACGAACAATTCCTTCAAGGCATGaaaa                                                                                                       >  2:359795/1‑150 (MQ=255)                                                    gTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTTCTACCCGAGCCGCCCAAGCCGGTGGGCTCCCAAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgtg                                                                                               >  1:151640/1‑150 (MQ=255)                                                        gagaCGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTg                                                                                           >  1:972937/1‑150 (MQ=255)                                                             ggCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCa                                                                                      >  1:1146022/1‑150 (MQ=255)                                                                         cAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTc                                                                          <  2:1240317/150‑1 (MQ=255)                                                                          aaTACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTcc                                                                         <  1:437110/150‑1 (MQ=255)                                                                            tACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCa                                                                       <  1:240785/150‑1 (MQ=255)                                                                                  ttGAGTAACGATCCAGTTGAGACTGAGCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTCGGTGATCCACGAAATCACTTCCCATTGTTa                                                                 <  1:359795/150‑1 (MQ=255)                                                                                    gAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGa                                                               >  1:406162/1‑150 (MQ=255)                                                                                      gTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCTCGGGAGCCGCCGCgcgaggttggctcgttgagcac                                                                                                                   >  1:332457‑M2/1‑74 (MQ=255)                                                                                      gTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCTCGGGAGCCGCCGCgcgaggttggctcgttgagcac                                                                                                                   <  2:332457‑M2/96‑23 (MQ=255)                                                                                       tAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCTCATTGTAAGActc                                                            >  2:673736/1‑148 (MQ=255)                                                                                             tCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgt                                                                                                >  2:247972/1‑108 (MQ=255)                                                                                             tCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgt                                                                                                <  1:247972/108‑1 (MQ=255)                                                                                              ccAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGAt                                                     >  2:1245409/1‑150 (MQ=255)                                                                                                 gTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCAt                                                  >  2:474423/1‑150 (MQ=255)                                                                                                    gagaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCtcgggagccgccgcgcga                                                                                                                                     >  1:1280838‑M1/1‑46 (MQ=255)                                                                                                    gagaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCtcgggagccgccgcgcga                                                                                                                                     <  2:1280838‑M1/64‑19 (MQ=255)                                                                                                    gagaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCAtttt                                               <  2:313247/150‑1 (MQ=255)                                                                                                      gaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGt                                             <  1:1201698/150‑1 (MQ=255)                                                                                                         tGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCtt                                          >  1:661732/1‑150 (MQ=255)                                                                                                         tGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCtt                                          <  1:673736/150‑1 (MQ=255)                                                                                                          gATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTg                                         <  1:474423/150‑1 (MQ=255)                                                                                                          aaTCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTg                                         <  1:1088314/149‑1 (MQ=255)                                                                                                           aTCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCgcgg                                                                                                                                                   <  2:18583/43‑1 (MQ=255)                                                                                                           aTCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCgcgg                                                                                                                                                   >  1:18583/1‑43 (MQ=255)                                                                                                            tCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGt                                       <  2:1146022/150‑1 (MQ=255)                                                                                                               cTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGCCTCACTAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGACAAGAAGTCACGTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGc                                    <  1:997521/150‑1 (MQ=255)                                                                                                               cTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTATTGGTCGc                                    >  1:718390/1‑150 (MQ=255)                                                                                                                tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTc                                                                                                   <  2:466065/86‑1 (MQ=255)                                                                                                                tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTc                                                                                                   >  1:466065/1‑86 (MQ=255)                                                                                                                tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCt                                   >  1:59022/1‑150 (MQ=255)                                                                                                                    tAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCg                               >  1:963156/1‑150 (MQ=255)                                                                                                                            gTGCTCAACGAGCCAACCTCGCgcggcggctcccgagcgaggttggctcgttgagcacggcaattacatagcgatcagtctcaactggatcgttac                                                                             >  1:332457‑M1/1‑22 (MQ=255)                                                                                                                            gTGCTCAACGAGCCAACCTCGCgcggcggctcccgagcgaggttggctcgttgagcacggcaattacatagcgatcagtctcaactggatcgttac                                                                             <  2:332457‑M1/96‑75 (MQ=255)                                                                                                                                        ccAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCAtt           >  2:711578/1‑150 (MQ=255)                                                                                                                                        ccAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCAtt           >  1:499718/1‑150 (MQ=255)                                                                                                                                              tCGCGCGGCGGCTCCCGAgcgaggttggctcgttgagcacggcaattacatagcgatcagtctc                                                                                           >  1:1280838‑M2/1‑18 (MQ=255)                                                                                                                                              tCGCGCGGCGGCTCCCGAgcgaggttggctcgttgagcacggcaattacatagcgatcagtctc                                                                                           <  2:1280838‑M2/64‑47 (MQ=255)                                                                                                                                               cgctcgggagccgccgcgcgaggttggctcgttgagcacggcaattacatagcgatcagtctcaactggatcgttactcaacgagtattggcgcacaaggccgtctcgaacctttacatctatatgcgctccagccgtgaacgctggaag    <  2:753456‑M1/150‑148 (MQ=255)                                                                                                                                                 ctcgggagccgccgcgcgaggttggctcgttgagcacggcaattacatagcgatcagtctcaactggaaagttactcaacgagtattggcgcacaaggccgtctcgaacctttacatctatatgcgctccagccgtgaacgctggaagct  >  2:301889‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      AATGGCGAAAAGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATG  >  NC_002947/2214357‑2214650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.