| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2214501 | 34 (0.690) | 4 (0.080) | 4/242 | NT | 10.8% | coding (226/954 nt) | PP_1957 | Pdr/VanB family oxidoreductase |
| ? | NC_002947 | = 2214515 | 33 (0.700) | coding (240/954 nt) | PP_1957 | Pdr/VanB family oxidoreductase | |||||
AGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGCGCGGTATCTGA > NC_002947/2214367‑2214663 | aGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACTTTCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAg > 2:301889‑M2/1‑149 (MQ=255) cTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAgcg < 2:753456‑M2/150‑4 (MQ=255) aGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCa > 1:313247/1‑150 (MQ=255) gCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCAc > 2:1201698/1‑150 (MQ=255) cATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGc < 2:260759/150‑1 (MQ=255) aTGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGaaaa > 1:260837/1‑150 (MQ=255) aTGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCACTGCGGCTCCCGAGCTATTCACGAACAATTCCTTCAAGGCATGaaaa > 2:359795/1‑150 (MQ=255) gTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTTCTACCCGAGCCGCCCAAGCCGGTGGGCTCCCAAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgtg > 1:151640/1‑150 (MQ=255) gagaCGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTg > 1:972937/1‑150 (MQ=255) ggCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCa > 1:1146022/1‑150 (MQ=255) cAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTc < 2:1240317/150‑1 (MQ=255) aaTACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTcc < 1:437110/150‑1 (MQ=255) tACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCa < 1:240785/150‑1 (MQ=255) ttGAGTAACGATCCAGTTGAGACTGAGCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTCGGTGATCCACGAAATCACTTCCCATTGTTa < 1:359795/150‑1 (MQ=255) gAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGa > 1:406162/1‑150 (MQ=255) gTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCTCGGGAGCCGCCGCgcgaggttggctcgttgagcac < 2:332457‑M2/96‑23 (MQ=255) gTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCTCGGGAGCCGCCGCgcgaggttggctcgttgagcac > 1:332457‑M2/1‑74 (MQ=255) tAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCTCATTGTAAGActc > 2:673736/1‑148 (MQ=255) tCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgt < 1:247972/108‑1 (MQ=255) tCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCtgt > 2:247972/1‑108 (MQ=255) ccAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGAt > 2:1245409/1‑150 (MQ=255) gTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCAt > 2:474423/1‑150 (MQ=255) gagaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCAtttt < 2:313247/150‑1 (MQ=255) gaCTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGt < 1:1201698/150‑1 (MQ=255) tGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCtt < 1:673736/150‑1 (MQ=255) tGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCtt > 1:661732/1‑150 (MQ=255) gATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTg < 1:474423/150‑1 (MQ=255) aaTCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTg < 1:1088314/149‑1 (MQ=255) tCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGt < 2:1146022/150‑1 (MQ=255) cTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGCCTCACTAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGACAAGAAGTCACGTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGc < 1:997521/150‑1 (MQ=255) cTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTATTGGTCGc > 1:718390/1‑150 (MQ=255) tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTc < 2:466065/86‑1 (MQ=255) tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTc > 1:466065/1‑86 (MQ=255) tATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCt > 1:59022/1‑150 (MQ=255) tAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCg > 1:963156/1‑150 (MQ=255) ccAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCAtt > 1:499718/1‑150 (MQ=255) ccAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCAtt > 2:711578/1‑150 (MQ=255) tCGCGCGGCGGCTCCCGAgcgaggttggctcgttgagcacggcaattacatagcgatcagtctc > 1:1280838‑M2/1‑18 (MQ=255) tCGCGCGGCGGCTCCCGAgcgaggttggctcgttgagcacggcaattacatagcgatcagtctc < 2:1280838‑M2/64‑47 (MQ=255) ggcggcTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGgcg < 1:1245409/150‑1 (MQ=255) cggcTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGcgcg < 1:281834/150‑1 (MQ=255) cccGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGCGCGGTATc > 1:861117/1‑150 (MQ=255) ccGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGCGCGGTATCt < 2:59022/150‑1 (MQ=255) cGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGCGCGGTATCTg < 2:231315/150‑1 (MQ=255) gAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGCGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTCGGTCGCTGGCGGTATCGGAGTTACGCCGCTTTTGGCGATGGCGCGGTATCTGa > 1:1075927/1‑150 (MQ=255) | AGCTTCCAGCGTTCACGGCTGGAGCGCATATAGATGTAAAGGTTCGAGACGGCCTTGTGCGCCAATACTCGTTGAGTAACGATCCAGTTGAGACTGATCGCTATGTAATTGCCGTGCTCAACGAGCCAACCTCGCGCGGCGGCTCCCGAGCGATTCACGAACAATTCCTTCAAGGCATGAAAATTTCTGTGGGTGAGCCACGAAATCACTTCCCATTGTTAGACGCCGACGATCATTTTGTCTTGGTCGCTGGCGGTATCGGAGTTACGCCCATTTTGGCGATGGCGCGGTATCTGA > NC_002947/2214367‑2214663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |