New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2740020	36 (0.730)	3 (0.060)	3/242	NT	7.8%	coding (2356/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2740051	36 (0.760)					coding (2387/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

GGCGGCAAGGGGCAGCGTGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATG  >  NC_002947/2739872‑2740169                                                                                                                                                     |                                                                                                                                                      ggcggcAAGGGGCAGCGTGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCt                                                                                                                                                      <  2:705398/150‑1 (MQ=255)         ggggCAGCGTGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAg                                                                                                                                              <  1:382767/150‑1 (MQ=255)                  tGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTgg                                                                                                                                     <  1:603252/150‑1 (MQ=255)                  tGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTgg                                                                                                                                     <  2:1054412/150‑1 (MQ=255)                      ggCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTgggcgg                                                                                                                                 <  2:607574/150‑1 (MQ=255)                         tACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGcc                                                                                                                              <  1:865280/150‑1 (MQ=255)                                cAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCTGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTg                                                                                                                       >  2:404569‑M2/1‑149 (MQ=255)                                cAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTg                                                                                                                       >  2:905123‑M2/1‑149 (MQ=255)                                    cTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCagtatcggcccgcccagggagccttcgtacaggcgc                                                                                                                   <  2:540667‑M1/150‑37 (MQ=255)                                    cTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTgggc                                                                                                                                   >  2:1011708/1‑134 (MQ=255)                                    cTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTgggc                                                                                                                                   <  1:1011708/134‑1 (MQ=255)                                        ggTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGAc                                                                                                               >  2:792718/1‑150 (MQ=255)                                                           cTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTCCCCGGAAGCGAACAAGGTGTGCGCTGGCGCCagtatcggcccgcccagggagccttcgtacaggcgccagcgcacacc                                                                                                        <  1:726312‑M1/138‑48 (MQ=255)                                                           cTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCagtatcggcccgcccagggagccttcgtacaggcgccagcgcacacc                                                                                                        >  2:726312‑M1/1‑91 (MQ=255)                                                                tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTgg                                                                                                                      >  1:254991‑M2/1‑117 (MQ=255)                                                                tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTgg                                                                                                                      <  2:254991‑M2/119‑3 (MQ=255)                                                                tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGa                                                                                       >  2:460310/1‑150 (MQ=255)                                                                   gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGaa                                                                                                                                               >  2:1130191/1‑91 (MQ=255)                                                                   gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGaa                                                                                                                                               <  1:1130191/91‑1 (MQ=255)                                                                   gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                    >  2:503331/1‑150 (MQ=255)                                                                   gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                    >  2:380933/1‑150 (MQ=255)                                                                   gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                    <  1:380933/150‑1 (MQ=255)                                                                         gcaTGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCa                                                                              <  2:1273121/150‑1 (MQ=255)                                                                          caTGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTTCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCAc                                                                             <  1:792718/150‑1 (MQ=255)                                                                           aTGCAGACCTGGCACGGGAGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                            <  1:957447/118‑1 (MQ=255)                                                                           aTGCAGACCTGGCACGGGAGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                            >  2:957447/1‑118 (MQ=255)                                                                             gCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTc                                                                          >  2:353367/1‑150 (MQ=255)                                                                                gACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGCTACGTTCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTAAAc                                                                       >  1:921399/1‑150 (MQ=255)                                                                                 aCCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACg                                                                      >  1:722230/1‑150 (MQ=255)                                                                                   cTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGt                                                                    <  1:884662/150‑1 (MQ=255)                                                                                          gggTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTc                                                             >  2:520867/1‑150 (MQ=255)                                                                                                     ggCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGc                                                  <  1:503331/150‑1 (MQ=255)                                                                                                          gttgCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCa                                             <  1:353367/150‑1 (MQ=255)                                                                                                           ttgCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAg                                            >  1:556677/1‑150 (MQ=255)                                                                                                           ttgCGGAATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAg                                            >  2:1245294/1‑150 (MQ=255)                                                                                                                gTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCAc                                       >  1:1242009/1‑150 (MQ=255)                                                                                                                      aCCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCt                                 >  2:987074/1‑150 (MQ=255)                                                                                                                        ccGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                            >  2:1200833/1‑73 (MQ=255)                                                                                                                        ccGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                            <  1:1200833/73‑1 (MQ=255)                                                                                                                          ggAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGTCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGt                             >  1:1234175/1‑150 (MQ=255)                                                                                                                                gAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCa                                                      >  1:908106/1‑119 (MQ=255)                                                                                                                                gAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCa                                                      <  2:908106/119‑1 (MQ=255)                                                                                                                                 aaCAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGaggcag                      >  2:777599/1‑150 (MQ=255)                                                                                                                                      ggTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaag                             >  2:726312‑M2/1‑47 (MQ=255)                                                                                                                                      ggTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccggggagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaag                             <  1:726312‑M2/138‑92 (MQ=255)                                                                                                                                            cgcTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGGGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTc           >  1:476691/1‑150 (MQ=255)                                                                                                                                                 gcgcCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaaggtacaacgcttcaaatacccgag      <  2:540667‑M2/150‑115 (MQ=255)                                                                                                                                                 gcgcCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGt      >  2:186417/1‑150 (MQ=255)                                                                                                                                                    ccagtatcggcccgcccagggagccttcgtacaggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgta                                  <  2:254991‑M1/119‑118 (MQ=255)                                                                                                                                                    ccagtatcggcccgcccagggagccttcgtacaggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgta                                  >  1:254991‑M1/1‑2 (MQ=255)                                                                                                                                                     cagtatcggcccgcccagggagccttcgtacaggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaaggtacaacgcttcaaatacccgagcctg  >  2:905123‑M1/1‑1 (MQ=255)                                                                                                                                                     cagtatcggcccgcccagggagccttcgtacaggcgccagcgcacaccttgttcgcttcagggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaaggtacaacgcttcaaatacccgagcctg  >  2:404569‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGCGGCAAGGGGCAGCGTGCTGGCTACCCGCCAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATG  >  NC_002947/2739872‑2740169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.