New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2740020	36 (0.730)	3 (0.060)	3/242	NT	7.8%	coding (2356/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2740051	36 (0.760)					coding (2387/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

CAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAACGGCAGG  >  NC_002947/2739903‑2740200                                                                                                                                                     |                                                                                                                                                      cAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCTGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTg                                                                                                                                                      >  2:404569‑M2/1‑149 (MQ=255) cAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTg                                                                                                                                                      >  2:905123‑M2/1‑149 (MQ=255)         ggTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGAc                                                                                                                                              >  2:792718/1‑150 (MQ=255)                                 tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTgg                                                                                                                                                     >  1:254991‑M2/1‑117 (MQ=255)                                 tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTgg                                                                                                                                                     <  2:254991‑M2/119‑3 (MQ=255)                                 tACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGa                                                                                                                      >  2:460310/1‑150 (MQ=255)                                    gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                                                   >  2:380933/1‑150 (MQ=255)                                    gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                                                   <  1:380933/150‑1 (MQ=255)                                    gccgcAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCt                                                                                                                   >  2:503331/1‑150 (MQ=255)                                          gcaTGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCa                                                                                                             <  2:1273121/150‑1 (MQ=255)                                           caTGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTTCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCAc                                                                                                            <  1:792718/150‑1 (MQ=255)                                            aTGCAGACCTGGCACGGGAGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                                                           <  1:957447/118‑1 (MQ=255)                                            aTGCAGACCTGGCACGGGAGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                                                           >  2:957447/1‑118 (MQ=255)                                              gCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTc                                                                                                         >  2:353367/1‑150 (MQ=255)                                                 gACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGCTACGTTCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTAAAc                                                                                                      >  1:921399/1‑150 (MQ=255)                                                  aCCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACg                                                                                                     >  1:722230/1‑150 (MQ=255)                                                    cTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGt                                                                                                   <  1:884662/150‑1 (MQ=255)                                                           gggTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTc                                                                                            >  2:520867/1‑150 (MQ=255)                                                                      ggCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGc                                                                                 <  1:503331/150‑1 (MQ=255)                                                                           gttgCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCa                                                                            <  1:353367/150‑1 (MQ=255)                                                                            ttgCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAg                                                                           >  1:556677/1‑150 (MQ=255)                                                                            ttgCGGAATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAg                                                                           >  2:1245294/1‑150 (MQ=255)                                                                                 gTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCAc                                                                      >  1:1242009/1‑150 (MQ=255)                                                                                       aCCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCt                                                                >  2:987074/1‑150 (MQ=255)                                                                                         ccGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                                                           >  2:1200833/1‑73 (MQ=255)                                                                                         ccGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGa                                                                                                                                           <  1:1200833/73‑1 (MQ=255)                                                                                           ggAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGTCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGt                                                            >  1:1234175/1‑150 (MQ=255)                                                                                                 gAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCa                                                                                     >  1:908106/1‑119 (MQ=255)                                                                                                 gAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCa                                                                                     <  2:908106/119‑1 (MQ=255)                                                                                                  aaCAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGaggcag                                                     >  2:777599/1‑150 (MQ=255)                                                                                                       ggTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaag                                                            >  2:726312‑M2/1‑47 (MQ=255)                                                                                                       ggTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccggggagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaag                                                            <  1:726312‑M2/138‑92 (MQ=255)                                                                                                             cgcTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGGGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTc                                          >  1:476691/1‑150 (MQ=255)                                                                                                                  gcgcCTGTACGAAGGCTCCCTGGGCGGGCCGATACTggcgccagcgcacaccttgttcgcttccgggtagataccgcaacaagcccaaggccacccgtgccaggtctgcatgctgcggcgtatcaaggtacaacgcttcaaatacccgag                                     <  2:540667‑M2/150‑115 (MQ=255)                                                                                                                  gcgcCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGt                                     >  2:186417/1‑150 (MQ=255)                                                                                                                         tACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCg                              >  2:950629/1‑150 (MQ=255)                                                                                                                            gAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGAt                                       <  1:405445/138‑1 (MQ=255)                                                                                                                            gAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGAt                                       >  2:405445/1‑138 (MQ=255)                                                                                                                             aaGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAg                          <  1:186417/150‑1 (MQ=255)                                                                                                                              aGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGc                         <  1:950629/150‑1 (MQ=255)                                                                                                                                gCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCa                                                                            <  1:100938/97‑1 (MQ=255)                                                                                                                                gCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCa                                                                            >  2:100938/1‑97 (MQ=255)                                                                                                                                               cGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTTAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAAc        >  2:223992/1‑150 (MQ=255)                                                                                                                                               cGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAAc        >  1:1102862/1‑150 (MQ=255)                                                                                                                                                     tGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAACGGCAgg  >  2:512500/1‑150 (MQ=255)                                                                                                                                                     tGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAACGGCAgg  <  2:476691/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAGGCTCGGGTATTTGAAGCGTTGTACCTTGATACGCCGCAGCATGCAGACCTGGCACGGGTGGCCTTGGGCTTGTTGCGGTATCTACCCGGAAGCGAACAAGGTGTGCGCTGGCGCCTGTACGAAGGCTCCCTGGGCGGGCCGATACTGGCGAAGACCGAGCAAGGGCCGCGGGCGTTCGATCTGGTGCACGTCAACGGTAGGTTTCAACTGCATGGCAGCCAGGGCACGGCGCTGGGTGAGGCAGGCGAGTTGTTCGATGTCATGGCGTCAGCCTATACCGAAGCGCAACGGCAGG  >  NC_002947/2739903‑2740200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.