New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2974781 =	42 (0.860)	4 (0.090)	4/236	NT	8.8%	coding (671/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	2974820 =	43 (0.930)					coding (710/777 nt)	PP_2601	IclR family transcriptional regulator

ACGAGCTGCTCGCCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTT  >  NC_002947/2974634‑2974921                                                                                                                                                    |                                                                                                                                                 acgaGCTGCTCGCCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCa                                                                                                                                                >  1:1026647/1‑150 (MQ=255) acgaGCTGCTCGCCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCa                                                                                                                                                <  1:219430/150‑1 (MQ=255)            gCCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTg                                                                                                                                  >  2:109385/1‑150 (MQ=255)              cTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGc                                                                                                                                >  1:1234145/1‑150 (MQ=255)               tACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGca                                                                                                                               <  1:770036/150‑1 (MQ=255)                  cTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACag                                                                                                                            <  2:249008/150‑1 (MQ=255)                   tGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACaga                                                                                                                           <  1:463756/150‑1 (MQ=255)                           gcCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTc                                                                                                                   <  2:1026647/150‑1 (MQ=255)                                   agaacgggcgcaacagactgtgcggtaatcgaccggaatattccctcaggcaaacagctcgctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGCTGCGCGGCTGGCACAGAGCCGCCTCG‑CAgc                                                                                                             >  2:1235374‑M1/114‑150 (MQ=255)                                               cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt                                                                                              >  1:1110137/1‑150 (MQ=255)                                               cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt                                                                                              <  1:568145/150‑1 (MQ=255)                                                  ggTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt                                                                                           <  1:951811/150‑1 (MQ=255)                                                  gactgtgcggtaatcgaccggaatattccctcaggcaaacagctcgctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt                                                                                           >  2:866487‑M1/99‑150 (MQ=255)                                                   gTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgttg                                                                                          <  2:277860/150‑1 (MQ=255)                                                    tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt                                                                                         <  1:431057/150‑1 (MQ=255)                                                    tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt                                                                                         <  2:1198000/150‑1 (MQ=255)                                                            aCCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                 <  1:569607/150‑1 (MQ=255)                                                              cTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCaga                                                                               >  1:833360/1‑150 (MQ=255)                                                              cTCCGCCATCGGCACCTCAGCCCTGGCCGAAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCAATTGTTGTCGGCGGCaga                                                                               >  1:500749/1‑150 (MQ=255)                                                                         gCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTcgg                                                                    >  2:181829/1‑150 (MQ=255)                                                                                        ccGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCa                                                     <  2:833360/150‑1 (MQ=255)                                                                                            aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                 >  2:800291/1‑118 (MQ=255)                                                                                            aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                 <  1:800291/118‑1 (MQ=255)                                                                                                ctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCt                                                                                                          <  2:909290‑M1/37‑1 (MQ=255)                                                                                                ctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCt                                                                                                          >  1:909290‑M1/53‑89 (MQ=255)                                                                                                 tgCGCCCCCCGCAAAGTGACGACGTGATTGTCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGt                                            >  2:1114683/1‑150 (MQ=255)                                                                                                   cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc                                                         <  1:42145/135‑1 (MQ=255)                                                                                                   cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc                                                         >  2:42145/1‑135 (MQ=255)                                                                                                     ccgcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGc                                        <  2:1234145/150‑1 (MQ=255)                                                                                                       gcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCt                                      <  2:709064/150‑1 (MQ=255)                                                                                                           gcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAgg                                  <  2:554114/150‑1 (MQ=255)                                                                                                            cAAAGTGACGCGCTGAGTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCCCAG‑GCAGAGAGGTCAGCGCTGGCCCAGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAggg                                 <  1:415201/150‑1 (MQ=255)                                                                                                                   aCGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTc                          <  1:715011/150‑1 (MQ=255)                                                                                                                      aGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCgg                       >  1:823577/1‑150 (MQ=255)                                                                                                                            ttGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg                        <  1:294139/143‑1 (MQ=255)                                                                                                                            ttGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg                        >  2:294139/1‑143 (MQ=255)                                                                                                                               gCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGTCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata                             <  2:467055/135‑1 (MQ=255)                                                                                                                               gCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata                             >  1:467055/1‑135 (MQ=255)                                                                                                                                  tGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGca           >  1:400403/1‑150 (MQ=255)                                                                                                                                      gAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGt       <  2:400403/150‑1 (MQ=255)                                                                                                                                        gCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCt     >  2:444452/1‑150 (MQ=255)                                                                                                                                         cATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg                                                                                             <  2:1212387/61‑1 (MQ=255)                                                                                                                                         cATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg                                                                                             >  1:1212387/1‑61 (MQ=255)                                                                                                                                          aTCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGt   >  1:524156/1‑150 (MQ=255)                                                                                                                                           tCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt                      >  2:737400/1‑130 (MQ=255)                                                                                                                                           tCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt                      <  1:737400/130‑1 (MQ=255)                                                                                                                                           tCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt  <  2:524156/150‑1 (MQ=255)                                                                                                                                           tCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt  <  1:109385/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ACGAGCTGCTCGCCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑GCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTT  >  NC_002947/2974634‑2974921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.