New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2974781 =	42 (0.860)	4 (0.090)	4/236	NT	8.8%	coding (671/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	2974820 =	43 (0.930)					coding (710/777 nt)	PP_2601	IclR family transcriptional regulator

CTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCT  >  NC_002947/2974680‑2974955                                                                                                                                              |                                                                                                                                        cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt                                                                                                                                >  1:1110137/1‑150 (MQ=255) cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt                                                                                                                                <  1:568145/150‑1 (MQ=255)    ggTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt                                                                                                                             <  1:951811/150‑1 (MQ=255)    gactgtgcggtaatcgaccggaatattccctcaggcaaacagctcgctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt                                                                                                                             >  2:866487‑M1/99‑150 (MQ=255)     gTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgttg                                                                                                                            <  2:277860/150‑1 (MQ=255)      tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt                                                                                                                           <  1:431057/150‑1 (MQ=255)      tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt                                                                                                                           <  2:1198000/150‑1 (MQ=255)              aCCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                                                   <  1:569607/150‑1 (MQ=255)                cTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCaga                                                                                                                 >  1:833360/1‑150 (MQ=255)                cTCCGCCATCGGCACCTCAGCCCTGGCCGAAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCAATTGTTGTCGGCGGCaga                                                                                                                 >  1:500749/1‑150 (MQ=255)                           gCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTcgg                                                                                                      >  2:181829/1‑150 (MQ=255)                                          ccGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCa                                                                                       <  2:833360/150‑1 (MQ=255)                                              aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                                                   >  2:800291/1‑118 (MQ=255)                                              aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa                                                                                                                   <  1:800291/118‑1 (MQ=255)                                                   tgCGCCCCCCGCAAAGTGACGACGTGATTGTCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGt                                                                              >  2:1114683/1‑150 (MQ=255)                                                     cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc                                                                                           >  2:42145/1‑135 (MQ=255)                                                     cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc                                                                                           <  1:42145/135‑1 (MQ=255)                                                       ccgcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGc                                                                          <  2:1234145/150‑1 (MQ=255)                                                         gcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCt                                                                        <  2:709064/150‑1 (MQ=255)                                                             gcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAgg                                                                    <  2:554114/150‑1 (MQ=255)                                                              cAAAGTGACGCGCTGAGTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCCCAG‑GCAGAGAGGTCAGCGCTGGCCCAGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAggg                                                                   <  1:415201/150‑1 (MQ=255)                                                                     aCGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTc                                                            <  1:715011/150‑1 (MQ=255)                                                                        aGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCgg                                                         >  1:823577/1‑150 (MQ=255)                                                                              ttGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg                                                          >  2:294139/1‑143 (MQ=255)                                                                              ttGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg                                                          <  1:294139/143‑1 (MQ=255)                                                                                 gCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGTCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata                                                               <  2:467055/135‑1 (MQ=255)                                                                                 gCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata                                                               >  1:467055/1‑135 (MQ=255)                                                                                    tGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGca                                             >  1:400403/1‑150 (MQ=255)                                                                                        gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGt                                         <  2:400403/150‑1 (MQ=255)                                                                                          gCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCt                                       >  2:444452/1‑150 (MQ=255)                                                                                          aacaatagcggtgccagcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTc                                        >  2:866487‑M2/53‑150 (MQ=255)                                                                                           cATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg                                                                                                                               <  2:1212387/61‑1 (MQ=255)                                                                                           cATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg                                                                                                                               >  1:1212387/1‑61 (MQ=255)                                                                                            aTCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGt                                     >  1:524156/1‑150 (MQ=255)                                                                                             tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt                                                        >  2:737400/1‑130 (MQ=255)                                                                                             tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt                                                        <  1:737400/130‑1 (MQ=255)                                                                                             tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt                                    <  2:524156/150‑1 (MQ=255)                                                                                             tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt                                    <  1:109385/150‑1 (MQ=255)                                                                                                       CAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGttc                          <  2:737503‑M1/150‑1 (MQ=255)                                                                                                         gctgcgaggcggctctgtgccagccgcgcagcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGttct                         >  2:1235374‑M2/38‑150 (MQ=255)                                                                                                         agcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAg                                                                                      >  1:909290‑M2/38‑89 (MQ=255)                                                                                                         agcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAg                                                                                      <  2:909290‑M2/52‑1 (MQ=255)                                                                                                                   ggCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaaaa                 <  1:939522/147‑1 (MQ=255)                                                                                                                   ggCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaaaa                 >  2:939522/1‑147 (MQ=255)                                                                                                                           gccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTgg      <  2:823577/150‑1 (MQ=255)                                                                                                                           gccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTgg      <  1:61453/150‑1 (MQ=255)                                                                                                                            ccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct                      >  2:956746/1‑133 (MQ=255)                                                                                                                            ccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct                      <  1:956746/133‑1 (MQ=255)                                                                                                                               ccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCt  >  2:1170410/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                        CTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCT  >  NC_002947/2974680‑2974955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.