New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3214883 =	40 (0.820)	3 (0.070)	3/232	NT	7.6%	coding (755/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214934 =	36 (0.790)					coding (806/3129 nt)	mexD	multidrug RND transporter MexD

CTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCC  >  NC_002947/3214743‑3215032                                                                                                                                              |                                                                                                                                                      cTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCaa                                                                                                                                              <  2:494731/150‑1 (MQ=255)        aTTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGAt                                                                                                                                       <  1:880067/150‑1 (MQ=255)         ttCGCGGCCAGAACGTCCAGGTACGGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGCGCAGGAGCTGACCGCGACCCTGGCCGTTCAGGGCAC‑TCTCGACACCTCGGAAGCGTTGGCCGGGCACGTCCTGCGAGCCAACGCCGATg                                                                                                                                      >  1:107837/1‑150 (MQ=255)             cgGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCCACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTc                                                                                                                                  <  1:1118698/150‑1 (MQ=255)                 cAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGc                                                                                                                              >  1:482565/1‑150 (MQ=255)                       gTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGc                                                                                                                        <  1:148374/150‑1 (MQ=255)                         ccAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGAAGGACAC‑TCTCGACACACCGCAAACGATAGAAGTGATCTGCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCt                                                                                                                      >  1:287251/1‑150 (MQ=255)                          cAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTg                                                                                                                     <  1:872640/150‑1 (MQ=255)                           aGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTgg                                                                                                                    >  1:1273682/1‑150 (MQ=255)                                  ggccggcAGCTTCGGCAGCACGCCCGGTGCCAGCGAGAAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGCGACTGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGAtgt                                                                                                             >  1:1042334/1‑150 (MQ=255)                                    ccggcAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCATGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTgg                                                                                                           >  1:816236/1‑150 (MQ=255)                                     cggcAGCTTCGGCAGCACGCCCGGTGCAAGAGCGCAAGCGCTGAGCGCGATCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGgc                                                                                                          <  2:530856/150‑1 (MQ=255)                                       gtctggatggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctaccgatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGgcg                                                                                                         <  2:859543‑M1/47‑1 (MQ=255)                                           ggatggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctacagatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCa                                                                                                     >  1:276156‑M1/100‑150 (MQ=255)                                            ttCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCATGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg                                                                                                   <  2:816236/150‑1 (MQ=255)                                             atggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctaccgatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg                                                                                                   >  1:859543‑M1/98‑150 (MQ=255)                                               ggCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                <  2:1070421/150‑1 (MQ=255)                                                gcagcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCa                                                                                               >  1:393190/1‑150 (MQ=255)                                                   gcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCg                                                                                            <  2:311763/150‑1 (MQ=255)                                                       gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTc                                                                                                                           <  1:516492/115‑1 (MQ=255)                                                       gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTc                                                                                                                           >  2:516492/1‑115 (MQ=255)                                                       gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGCACACGTCT‑GACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAg                                                                                        >  1:732490/1‑150 (MQ=255)                                                         ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGAGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCg                                                                                      >  1:535885/1‑150 (MQ=255)                                                             tGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCACCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                  <  2:547999/150‑1 (MQ=255)                                                                cAGGGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCCGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTa                                                                               <  1:252453/150‑1 (MQ=255)                                                                   cGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACaa                                                                            <  2:106230/150‑1 (MQ=255)                                                                    gAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAAc                                                                           <  2:482565/150‑1 (MQ=255)                                                                       cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                  >  2:793373/1‑140 (MQ=255)                                                                       cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                  <  1:793373/140‑1 (MQ=255)                                                                                aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgcgcgc                                                               >  1:834857/1‑150 (MQ=255)                                                                                aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCATTCGCCGGCATCGCCCTGCGCGCCAACCCTTATGGCTCCAGCGTGCGCCTGGGAGAGGTGGCGCGCATGTCCATCGGTAGCGAGAACTATAACCCGTTGgcgcgc                                                               >  1:1159995/1‑150 (MQ=255)                                                                                       cccTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACg                                                        <  2:834857/150‑1 (MQ=255)                                                                                          tGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTTCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGcc                                                     >  1:482544/1‑150 (MQ=255)                                                                                                 gCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggc                                              <  2:393190/150‑1 (MQ=255)                                                                                                         c‑tctCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcg                                      <  2:809390/150‑1 (MQ=255)                                                                                                           tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                >  1:986071/1‑91 (MQ=255)                                                                                                           tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                <  2:986071/91‑1 (MQ=255)                                                                                                                    cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc                                                                      >  1:226591/1‑108 (MQ=255)                                                                                                                    cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc                                                                      <  2:226591/108‑1 (MQ=255)                                                                                                                             gTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGcc                   >  2:385216/1‑150 (MQ=255)                                                                                                                                   cGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCAGGTGCGGTGCAGTTGGCGCCGGgcgc             >  1:629468/1‑150 (MQ=255)                                                                                                                                       aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt         <  1:819626/150‑1 (MQ=255)                                                                                                                                       aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt         >  2:1059216/1‑150 (MQ=255)                                                                                                                                              TGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATcc  <  2:316178‑M1/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      CTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCC  >  NC_002947/3214743‑3215032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.