New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3214883 =	40 (0.820)	3 (0.070)	3/232	NT	7.6%	coding (755/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214934 =	36 (0.790)					coding (806/3129 nt)	mexD	multidrug RND transporter MexD

TTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCT  >  NC_002947/3214786‑3215069                                                                                                                                                      |                                                                                                                                        ttCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCATGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg                                                                                                                                        <  2:816236/150‑1 (MQ=255)  atggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctaccgatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg                                                                                                                                        >  1:859543‑M1/98‑150 (MQ=255)    ggCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                                                     <  2:1070421/150‑1 (MQ=255)     gcagcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCa                                                                                                                                    >  1:393190/1‑150 (MQ=255)        gcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCg                                                                                                                                 <  2:311763/150‑1 (MQ=255)            gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGCACACGTCT‑GACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAg                                                                                                                             >  1:732490/1‑150 (MQ=255)              ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGAGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCg                                                                                                                           >  1:535885/1‑150 (MQ=255)                  tGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCACCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                                                       <  2:547999/150‑1 (MQ=255)                     cAGGGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCCGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTa                                                                                                                    <  1:252453/150‑1 (MQ=255)                        cGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACaa                                                                                                                 <  2:106230/150‑1 (MQ=255)                         gAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAAc                                                                                                                <  2:482565/150‑1 (MQ=255)                            cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                                                       <  1:793373/140‑1 (MQ=255)                            cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa                                                                                                                       >  2:793373/1‑140 (MQ=255)                                     aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgcgcgc                                                                                                    >  1:834857/1‑150 (MQ=255)                                     aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCATTCGCCGGCATCGCCCTGCGCGCCAACCCTTATGGCTCCAGCGTGCGCCTGGGAGAGGTGGCGCGCATGTCCATCGGTAGCGAGAACTATAACCCGTTGgcgcgc                                                                                                    >  1:1159995/1‑150 (MQ=255)                                            cccTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACg                                                                                             <  2:834857/150‑1 (MQ=255)                                               tGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTTCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGcc                                                                                          >  1:482544/1‑150 (MQ=255)                                                      gCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggc                                                                                   <  2:393190/150‑1 (MQ=255)                                                              c‑tctCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcg                                                                           <  2:809390/150‑1 (MQ=255)                                                                tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                                                     <  2:986071/91‑1 (MQ=255)                                                                tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc                                                                                                                                     >  1:986071/1‑91 (MQ=255)                                                                         cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc                                                                                                           >  1:226591/1‑108 (MQ=255)                                                                         cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc                                                                                                           <  2:226591/108‑1 (MQ=255)                                                                                  gTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGcc                                                        >  2:385216/1‑150 (MQ=255)                                                                                        cGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCAGGTGCGGTGCAGTTGGCGCCGGgcgc                                                  >  1:629468/1‑150 (MQ=255)                                                                                            aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt                                              >  2:1059216/1‑150 (MQ=255)                                                                                            aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt                                              <  1:819626/150‑1 (MQ=255)                                                                                                 catgcgcgccacatcacccaggcggacgctggagccatcggggttggcgcgcaTGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCAt                                         >  1:859543‑M2/54‑150 (MQ=255)                                                                                                   tgcgcgccacatcacccaggcggacgctggagccatcggggttggcgcgcaTGGCCATCTGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATcc                                       >  1:276156‑M2/52‑150 (MQ=255)                                                                                                   TGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATcc                                       <  2:316178‑M1/150‑1 (MQ=255)                                                                                                       cgccacatcacccaggcggacgctggagccatcggggttggcgcgcaTGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGAc                                   <  2:859543‑M2/103‑1 (MQ=255)                                                                                                        GCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGAcc                                  >  2:1131776‑M1/1‑150 (MQ=255)                                                                                                         CCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACcg                                 >  2:1240777‑M1/1‑150 (MQ=255)                                                                                                          CAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACcgc                                <  1:687655‑M1/150‑1 (MQ=255)                                                                                                             ccccGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGAc                             <  1:316178/150‑1 (MQ=255)                                                                                                             ccccGATGACTCCAGCGTCCGCCAGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTATCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGAc                             >  2:233858/1‑150 (MQ=255)                                                                                                                       tCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAg                   >  2:962886/1‑150 (MQ=255)                                                                                                                          aGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGAGCCGGACGTCATAGCCATCCAGACCGCGACGCTGGTCAAGGAg                >  2:1066543/1‑150 (MQ=255)                                                                                                                              tCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTa                                                                                                                              <  1:187764/36‑1 (MQ=255)                                                                                                                              tCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTa                                                                                                                              >  2:187764/1‑36 (MQ=255)                                                                                                                              tCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGGCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCt            >  2:630363/1‑150 (MQ=255)                                                                                                                                cGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTg          <  2:287251/150‑1 (MQ=255)                                                                                                                                 gCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAg                   <  2:335582/140‑1 (MQ=255)                                                                                                                                 gCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAg                   >  1:335582/1‑140 (MQ=255)                                                                                                                                  ccTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGc        >  2:492793/1‑150 (MQ=255)                                                                                                                                  ccTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGc        >  1:208063/1‑150 (MQ=255)                                                                                                                                   cTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGcc       >  2:436283/1‑150 (MQ=255)                                                                                                                                     gggTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGa     <  2:482544/150‑1 (MQ=255)                                                                                                                                        tGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCt  <  2:687655/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                        TTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCT  >  NC_002947/3214786‑3215069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.